FC877891

Overview
NameFC877891
Unique NameFC877891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877891_ssr149 microsatellite FC877891_ssr149:149..160. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5256 contig Ccv1_Contig5256:1..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877891 vs. ExPASy Swiss-Prot
Match: XYP11_ARATH (Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.369e-21
Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 2
Query:  173 LIMVSCIGSSSGQALAPGPYMAFGPSPSPEDDCLMKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLL--GKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVP 523
            L +  C G S     AP P  A GPS SP + CL+ +LN+SDC SYV  GSN   P+  CCPELAG+V+S+P C+C L   G +  +G+K+D  RA +L ++CGV  P  +LCS+ G P
Sbjct:   13 LFLSLCSGQSPP---APEPIAADGPS-SPVN-CLVSMLNVSDCFSYVQVGSNEIKPEAACCPELAGMVQSSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFP 126          
BLAST of FC877891 vs. ExPASy Swiss-Prot
Match: NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.487e-15
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  266 DCLMKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLA 514
            DC   +LNM+DCLS+VT GS V  P+  CC  L  +V + P CLC+    + + G+ +D+++A  LPSVC V  PP   C L+
Sbjct:   26 DCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTLDLSKAASLPSVCKVAAPPSARCGLS 108          
BLAST of FC877891 vs. ExPASy Swiss-Prot
Match: NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.804e-14
Identity = 38/117 (32.48%), Postives = 64/117 (54.70%), Query Frame = 2
Query:  173 LIMVSCIGSSSGQALAPGPYMAFGPSPSPEDDCLMKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVP 523
            L ++  +  SS   L    + A  P+PS   DC   +LNM+DCLS+V+ G  V  P+  CC  L  +++++  CLC+    + + G+ ++IT+A  LP+ C +  P +  C L+  P
Sbjct:   13 LFLIVLLSLSSVSVLGASHHHATAPAPSV--DCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATCGLSVAP 127          
The following BLAST results are available for this feature:
BLAST of FC877891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
XYP11_ARATH2.369e-2147.06Xylogen-like protein 11 OS=Arabidopsis thaliana GN... [more]
NLTL2_ARATH1.487e-1543.37Non-specific lipid-transfer protein-like protein A... [more]
NLTL5_ARATH2.804e-1432.48Non-specific lipid-transfer protein-like protein A... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA49BE06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877891 ID=FC877891; Name=FC877891; organism=Citrus clementina; type=EST; length=822bp
CCCTTTCTTTTCCCACTCACGCACTTCACCGGAATCGCCACAATATATCA
ACTATAACAACACTTCACAAAACCTCAGCAATAGTTAACTTAAATATTTG
TCATTCGCCAATATGGGAAAGGGAAACCGCAGCGCAGCAGCAACCGCAGC
CGCCGCCGCCGCTGCTTTCTTCTTAATAATGGTTTCTTGTATCGGCTCTT
CGTCAGGCCAGGCGTTGGCGCCGGGGCCATATATGGCCTTCGGGCCGTCA
CCCTCGCCCGAGGACGACTGTTTGATGAAGGTACTGAACATGTCGGACTG
CTTGTCGTACGTGACGGAGGGAAGCAATGTGACGGTGCCGGACAAGCCGT
GCTGCCCGGAGCTGGCCGGTTTGGTTGAGAGCAACCCCATTTGTTTGTGC
CAGCTTCTCGGGAAGAACAATACGTATGGAATCAAGATTGATATCACTCG
AGCTCTCAAGCTTCCTTCTGTTTGTGGCGTCACCACCCCTCCGGTTAATC
TTTGCTCCTTGGCTGGAGTTCCGATTGAAGCTCCAACAGGAAGCCCAGGG
CCCGCGTCACCAGGTACTCAACCGCCGTCCGGTTTAGCTGCCAGCCCTTC
AAATGGAAATAATGACAATGCAGCATCAGGCAACGCAGGCTCCGTTCTGG
CCCTCCTTGTTGGCTTAGCAGTTGCATCTCTGATTTAATTCTTATTTTAT
TGTTTTAATTTCATACTTGAATATTTTTTTCTTTTAAATTTTTGGAATGG
TATTTTATGTTTTATTGTATTTGTACCCAGATAATTTGTGTCTAGCTAGT
GACACCAATAATATTCTCTCTT
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