FC877899

Overview
NameFC877899
Unique NameFC877899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877899_ssr37 microsatellite FC877899_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7906 contig Ccv1_Contig7906:95..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 2.471e-99
Identity = 177/206 (85.92%), Postives = 186/206 (90.29%), Query Frame = 1
Query:   58 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 675
            MVSGSGIC+KRVVVDARHHMLGRLASI AKELLNGQKVV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            YEGVP PYDK+KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKER+ V YERKKQLNKLR KAEKVAEEKLG+QLDILAPVKY
Sbjct:    1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 7.189e-99
Identity = 173/206 (83.98%), Postives = 187/206 (90.78%), Query Frame = 1
Query:   58 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 675
            MVSGSGICAKRVVVDARHHMLGRLAS+VAK+LLNGQ +V VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDK+KRMV+PDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKER+Q  YERKKQL+KLRAKAEKVAEEKLGSQLD+LAPVKY
Sbjct:    1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.568e-98
Identity = 174/206 (84.47%), Postives = 185/206 (89.81%), Query Frame = 1
Query:   58 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 675
            MVSGSGICAKRVVVD RHHMLGRLAS  AKELLNGQ+VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EG+P PYDK+KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKERSQV YERKKQLNKLR KAEKVAEE+LGSQLD+LAPVKY
Sbjct:    1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 2.313e-97
Identity = 174/206 (84.47%), Postives = 184/206 (89.32%), Query Frame = 1
Query:   58 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 675
            MVSGSGIC+KRVVVDARHHM GRLASI+AKELLNGQ VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDKVKRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKERSQ  YERKKQL KLRAKAEKVAEEKLGSQLD+LA +KY
Sbjct:    1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 8.226e-95
Identity = 173/206 (83.98%), Postives = 185/206 (89.81%), Query Frame = 1
Query:   58 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 675
            MVSGSGI AKRVVVDARHHMLGRLASIVAKELLNGQKVV VR EEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIH  AP+KIFWRTVRGMIPHKT            YEG+P P+DK KR+V+PDALKVLRLQKGHKYCLLG+L+SEVGWNYYDTI+ELEKKRKERSQV YERKKQLNKLR KAE+VA+EKLGSQLDILAPVKY
Sbjct:    1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.406e-86
Identity = 152/206 (73.79%), Postives = 180/206 (87.38%), Query Frame = 1
Query:   58 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 675
            MVSGSGICAK VVVDARHHMLGRLASI+AKELL+GQ+VV VRCEEICMSGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++I WRT+RGMIPHKT            +EGVP PYD+ KRMVIPDALKVLRLQ GHKYCLLGRL+ EVGW+++DTI ELE+KRK ++QV+YER+KQL KLR+KA ++AE++L  ++++LA +KY
Sbjct:    1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 8.041e-58
Identity = 111/184 (60.33%), Postives = 133/184 (72.28%), Query Frame = 1
Query:   85 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEK 636
            K VVVD R H+LGRLA+ +AKELLNGQ+VVAVR EEI +SG L R K+K+  FL+KRMNT P  GP HFR+PA+I WRT+RGMIPHKT            +EGVP PYDK+KRMVIP AL+VLRL+ G K+C+LGRLA+EVGW + D +  LE+KRK +S   Y RKK L  LRAKA      K
Sbjct:    4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASK 187          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.791e-57
Identity = 107/190 (56.32%), Postives = 139/190 (73.16%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 660
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+G   ++L
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 196          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 5.212e-57
Identity = 106/190 (55.79%), Postives = 138/190 (72.63%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 660
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+    ++L
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 196          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 6.807e-57
Identity = 106/190 (55.79%), Postives = 138/190 (72.63%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 660
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+    ++L
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 196          
The following BLAST results are available for this feature:
BLAST of FC877899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
R13A4_ARATH2.471e-9985.9260S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A1_ARATH7.189e-9983.9860S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A3_ARATH3.568e-9884.4760S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A2_ARATH2.313e-9784.4760S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
RL13A_LUPLU8.226e-9583.9860S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_PICMA1.406e-8673.7960S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_CYAPA8.041e-5860.3360S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_BOVIN1.791e-5756.3260S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_HUMAN5.212e-5755.7960S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
RL13A_PONAB6.807e-5755.7960S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877899 ID=FC877899|Name=FC877899|organism=Citrus clementina|type=EST|length=892bp
AGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAGAGAGAGGAAC
CCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGAGTGGTGGTGG
ACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGTGGCCAAGGAG
CTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAGAGATTTGCAT
GTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGGTTCCTTCGCA
AGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTTCCGCGCCCCT
GCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGCATAAGACCAA
GCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAAGGGGTCCCTG
CACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGCTCTCAAGGTT
TTGAGGCTTCAGAAGGGTCACAAGTACTGCTTGTTAGGTCGCCTGGCATC
TGAGGTTGGATGGAATTATTATGACACCATCAGGGAGCTTGAGAAGAAGA
GAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAAGAAGCAGCTCAACAAA
CTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGAAACTTGGCTCGCAATT
GGACATCCTTGCTCCTGTCAAATATTGATCAGTTAGCTTGTTGAGAACAA
TTTTGTTGGGCATTGTCTTGAATTTCCTTTGTGTTTTCGACTTTGTTCAA
GACTTTTAGAAGCTAAGAATTTGATACAACTTGAGTGATTATCTTTTTTT
TTTTCCCCACTTAAAACTGATGGTTGTAGAATGATTTCGTTATATTTCTA
GATATACTGGGTGGTGTTTNAAAGGAAAAAAAAAAAAAAAAA
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