FC877900

Overview
NameFC877900
Unique NameFC877900
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11681 contig Ccv1_Contig11681:165..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 7.333e-65
Identity = 130/171 (76.02%), Postives = 146/171 (85.38%), Query Frame = 1
Query:   55 MAEAPT-SPAG-GSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLNYVNPQAQGQHMIVP 561
            MAE+   SP G GSHESGG+QSP +  VREQDR+LPIANISRIMK+ LPANGKIAKDAK+ VQECVSEFISF+TSEASDKCQ+EKRKTINGDDLLWAMATLGFEDY++PLK YLMRYREMEGDTKGSA+GGD +AK+D   +  GQ +Q A QGP  Y N QAQ QHM+VP
Sbjct:    1 MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQGP--YGNSQAQ-QHMMVP 168          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.911e-62
Identity = 126/179 (70.39%), Postives = 143/179 (79.89%), Query Frame = 1
Query:   55 MAEAPTSPAGG-SHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLN---YVNPQAQGQHMIVPSMQGNE 579
            MAE+ T   GG SHESGG+QSP +  VREQDR+LPIANISRIMK+ LP NGKIAKDAK+T+QECVSEFISF+TSEASDKCQ+EKRKTINGDDLLWAMATLGFEDYIDPLK YLMRYREMEGDTKGS +GG+ SAKRD   +   Q +Q   QG  +   Y N  +QG +M+V  M G E
Sbjct:    1 MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQGPYGN--SQGSNMMV-QMPGTE 176          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.525e-59
Identity = 119/170 (70.00%), Postives = 133/170 (78.24%), Query Frame = 1
Query:   55 MAEAPTSPAGG--SHESGGEQSPHAGG-VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIG-------ALPGQNAQYALQGPLNYVNPQ 534
            MAEAP SP GG  SHESG  +    GG VREQDR+LPIANISRIMKKA+PANGKIAKDAK+TVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMATLGFEDYI+PLK YL +YREMEGD+K +A+  DGS K+D +G       A  G   Q A    + Y+ PQ
Sbjct:    1 MAEAPASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQPQ 170          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.897e-58
Identity = 118/177 (66.67%), Postives = 133/177 (75.14%), Query Frame = 1
Query:   55 MAEAPTSPAGG--SHESG--------GEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIG-------ALPGQNAQYALQGPLNYVNPQ 534
            MA+ P SP GG  SHESG        G      GGVREQDR+LPIANISRIMKKA+PANGKIAKDAK+TVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMATLGFEDYI+PLK YL +YREMEGD+K +A+ GDGS K+D +G       +  G   Q A    + Y+ PQ
Sbjct:    1 MADGPGSPGGGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKDVLGSHGGSSSSAQGMGQQAAYNQGMGYMQPQ 177          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 6.222e-56
Identity = 110/144 (76.39%), Postives = 119/144 (82.64%), Query Frame = 1
Query:   55 MAEAPTSPAGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQ 486
            MA+ P+SPAG   ESGG        VREQDRYLPIANISRIMKKALP NGKI KDAKDTVQECVSEFISFITSEASDKCQKEKRKT+NGDDLLWAMATLGFEDY++PLK YL RYRE+EGD KGS + GDGS  RD  G + G+
Sbjct:    1 MADTPSSPAGDGGESGGS-------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS-NRDAGGGVSGE 136          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.447e-52
Identity = 106/165 (64.24%), Postives = 127/165 (76.97%), Query Frame = 1
Query:   61 EAPTSPAGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYA-------LQGPLNYVNPQ 534
            E     A   H+  G   P +GGVREQDR+LPIANISRIMKKA+PANGKIAKDAK+T+QECVSEFISF+TSEASDKCQKEKRKTING+DLL+AM TLGFE+Y+DPLK YL +YRE+ GD+K S++ GDGS K+DTIG   G ++  A        QG + Y+ PQ
Sbjct:   10 EGGAGMADAGHDESGSP-PRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGDGSVKKDTIGPHSGASSSSAQGMVGAYTQG-MGYMQPQ 172          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.698e-45
Identity = 89/135 (65.93%), Postives = 106/135 (78.52%), Query Frame = 1
Query:   79 AGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR---GGD-GSAKRDTIG 471
            +GG      +    +   REQDR+LPIAN+SRIMKKALPAN KI+KDAK+T+QECVSEFISF+T EASDKCQKEKRKTINGDDLLWAM TLGFEDY++PLK YL R+RE+EG+  G  R   GG+ G  +RD +G
Sbjct:    8 SGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVGEHQRDAVG 142          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.784e-45
Identity = 88/123 (71.54%), Postives = 102/123 (82.93%), Query Frame = 1
Query:   79 AGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGD-TKGSARGGD 444
            A   ++SGG +       REQDR+LPIAN+SRIMKKALPAN KI+KDAK+TVQECVSEFISFIT EASDKCQ+EKRKTINGDDLLWAM TLGFEDY++PLK YL +YRE+EG+ T  + R GD
Sbjct:    2 ADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB4_ORYSJ (Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp. japonica GN=NFYB4 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.041e-43
Identity = 88/126 (69.84%), Postives = 104/126 (82.54%), Query Frame = 1
Query:   94 ESGGEQSPHAGGV-REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTI 468
            E+GG      GGV +EQDR+LPIANI RIM++A+P NGKIAKD+K++VQECVSEFISFITSEASDKC KEKRKTINGDDL+W+M TLGFEDY++PLK YL  YRE EGDTKGS R  +   K+D +
Sbjct:    9 ENGGGGG--GGGVGKEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGS-RASELPVKKDVV 131          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.665e-40
Identity = 82/152 (53.95%), Postives = 105/152 (69.08%), Query Frame = 1
Query:   64 APTSPAGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLN 519
            A T+P   S ++    + +    +EQDR+LPIAN+ RIMKK LP NGKI+KDAK+TVQECVSEFISF+T EASDKCQ+EKRKTINGDD++WA+ TLGFEDY+ PLK YL +YR+ EG+   S +      ++  I      N Q+  Q   N
Sbjct:   16 AETNPGSPSSKTNNNNNNN----KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQNHHNYQFQEQDQNN 163          
The following BLAST results are available for this feature:
BLAST of FC877900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB8_ARATH7.333e-6576.02Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYBA_ARATH9.911e-6270.39Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB_MAIZE3.525e-5970.00Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB3_ORYSJ3.897e-5866.67Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYB1_ARATH6.222e-5676.39Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB2_ORYSJ2.447e-5264.24Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]
NFYB2_ARATH1.698e-4565.93Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB3_ARATH3.784e-4571.54Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB4_ORYSJ6.041e-4369.84Nuclear transcription factor Y subunit B-4 OS=Oryz... [more]
NFYB7_ARATH3.665e-4053.95Nuclear transcription factor Y subunit B-7 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877900 ID=FC877900; Name=FC877900; organism=Citrus clementina; type=EST; length=792bp
CTTCTCTTAACTCGCGCGCCAATACAAAAACTCTGGGGATTTTATTTTTC
GGAGATGGCGGAAGCACCGACGAGTCCGGCGGGAGGTAGCCACGAGAGCG
GGGGAGAGCAGAGCCCGCACGCTGGGGGAGTGAGAGAGCAGGACAGGTAT
TTGCCAATAGCTAACATTAGCAGGATCATGAAGAAGGCTTTGCCTGCTAA
TGGCAAGATCGCTAAGGATGCTAAGGATACTGTACAGGAATGTGTCTCTG
AGTTCATCAGCTTCATTACCAGCGAGGCGAGTGATAAGTGTCAGAAGGAG
AAGAGGAAGACAATTAATGGGGATGATTTGCTCTGGGCAATGGCAACTCT
GGGTTTTGAAGATTATATTGATCCTCTTAAGGCATACCTTATGAGGTACA
GGGAGATGGAGGGTGACACCAAAGGATCTGCTAGGGGTGGGGATGGATCT
GCTAAAAGGGACACGATTGGAGCTCTGCCTGGCCAAAATGCACAGTATGC
TCTTCAGGGTCCACTCAACTATGTTAATCCCCAAGCACAGGGGCAGCATA
TGATCGTTCCATCCATGCAGGGAAATGAATAAGTGGTTTCTAGCTTCACT
GTCACATATTTTATGATTTTAGGGTTGCTCAAATTGTTTAGTTTCAACAC
CTATAGCATCTTTGATATTAACTTATCTGCTTGATCTGAAGTTCTATATT
TTTTTCAGATTTTTTTCCTTTTATGTTTGTTGTTGAGGGTGATGGTGGTT
CGGGATTTTTTTCCCTTCCCTTTTGTCTTCTACATGCCCTTA
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