FC877902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 9.894e-67 Identity = 95/166 (57.23%), Postives = 119/166 (71.69%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYG--QITLDGLFEVTGLVP 917 LELNASDERGIQVVR+KVK FAQLTVS +R DG+PCPP+K+VILDEADSMT+AAQAAL FCLICNYVSRII P+TSRCSKFRFKPLS + +RL +I E V +G+ + V GDLR+A+T +Q RL G +++ D + ++ G++P Sbjct: 106 LELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEI-AYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIP 270 HSP 2 Score: 97.0561 bits (240), Expect = 9.894e-67 Identity = 52/97 (53.61%), Postives = 62/97 (63.92%), Query Frame = 2 Query: 134 MQAFLKTGKISNNEK-------PASSVXXXXXXXXXXXXWVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403 MQAFLK +S + PA++ WVEKYRPK +D++ Q EVV VLR+ L G DLP+LLFYGPPGTGKTS ILAAAR+LFG Sbjct: 1 MQAFLKGTSVSAKAQLTKDRGTPATAGSSGETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFG 97
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 5.303e-65 Identity = 96/166 (57.83%), Postives = 117/166 (70.48%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYG--QITLDGLFEVTGLVP 917 LELNASDERGIQVVR+KVK FAQLTVS +R DG+PCPP+K+VILDEADSMT+AAQAAL FCLICNYVSRII P+TSRCSKFRFKPLS + +RL +I E V + S + V GDLR+A+T +Q RL G +IT + ++ G++P Sbjct: 106 LELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKI-SDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIP 270 HSP 2 Score: 93.9745 bits (232), Expect = 5.303e-65 Identity = 52/97 (53.61%), Postives = 60/97 (61.86%), Query Frame = 2 Query: 134 MQAFLKTGKISNNEK-------PASSVXXXXXXXXXXXXWVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403 MQAFLK IS AS+ WVEKYRPK +D++ Q EVV VL++ L G DLP+LLFYGPPGTGKTS ILAAAR+LFG Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFG 97
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_YEAST (Replication factor C subunit 2 OS=Saccharomyces cerevisiae GN=RFC2 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 5.607e-55 Identity = 89/173 (51.45%), Postives = 108/173 (62.43%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRP---DGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQR---LYG---QITLDGLFEVTGLVP 917 LELNASDERGI +VR+KVK FA+LTVS+ + PCPPYK++ILDEADSMT AQ+AL FCLICNYV+RII P+ SRCSKFRFK L N I RL+ I E V G VLE+ +D GDLRR +T +Q + G IT + E+ G+VP Sbjct: 93 LELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDG-VLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVP 264 HSP 2 Score: 82.8037 bits (203), Expect = 5.607e-55 Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG-DISRDRV 424 WVEKYRPK +D++ Q V VL++ L +LPH+LFYGPPGTGKTS ILA ++L+G D+ + R+ Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.260e-50 Identity = 78/166 (46.99%), Postives = 102/166 (61.45%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPD-GRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLY-GQITLDGLFEVTGLVP 917 LELNASDERGI+VVR K+K FA V++T P +KL+ILDEADSMT AQAAL FCL+CNY+SRII P+ SRC+KFRFKPL I+RLK I EG+ SV + GD+R+A+T +Q R + +I+ D ++ + G +P Sbjct: 78 LELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKC-EESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLP 242 HSP 2 Score: 83.1889 bits (204), Expect = 2.260e-50 Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG-DISRDRV 424 WV KYRPKT+DD+ Q +V+ L++ L G+LPHLLFYGPPGTGKTS ILA A ++G ++ + RV Sbjct: 12 WVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPELMKQRV 77
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_AERPE (Replication factor C small subunit OS=Aeropyrum pernix GN=rfcS PE=3 SV=3) HSP 1 Score: 134.42 bits (337), Expect = 1.003e-47 Identity = 77/166 (46.39%), Postives = 107/166 (64.46%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDR 923 LELNASDERGI V+R+KVK FA+ SRT P+ P+K+V+LDEAD+MT+ AQ AL F LI NY S+II PI SRC+ FRF+PLS+++VI+RL+ I +EGVD L+ + GD+R+A+ +Q L G++T+D ++ V G+ R Sbjct: 74 LELNASDERGINVIREKVKEFAR---SRTPPE----IPFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDY-EEEALDAIYEISEGDMRKAINVLQAASYL-GKVTVDAVYRVVGMAKPR 230 HSP 2 Score: 77.7962 bits (190), Expect = 1.003e-47 Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 WVEKYRP+++DDIVDQ VV+ L++ + ++PHLLF GPPGTGKT+A A A LFG+ Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGE 67
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_ARCFU (Replication factor C small subunit OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.003e-47 Identity = 75/161 (46.58%), Postives = 98/161 (60.87%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 F+E+NASDERGI VVR K+K FA RT P G P+K++ LDEAD++T AQAAL F L CNYVSRII PI SRC+ FRFKP+ +E + KRL EIC EGV + LE + GGD R+A+ A+Q + + D ++++T Sbjct: 71 FIEMNASDERGIDVVRHKIKEFA-----RTAPIGGA--PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG-LEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQIT 223 HSP 2 Score: 80.4925 bits (197), Expect = 1.003e-47 Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+T+D++V Q EV+Q L+ + ++PHLLF GPPGTGKT+ +A AR LFG+ RD Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD 69
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC4_CAEEL (Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 1.703e-47 Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 L+LNASDERGI VVR K+++F++ ++ + + K++ILDE D+MT AQAA+ F LICNYVSR+IPP+ SRC+KFRFK L E ++RL+ IC +EG + S L+Q ++ GDLRRA+ +Q Sbjct: 83 LDLNASDERGIAVVRQKIQSFSKSSLGHSHRED--VLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPM-SDDELKQVMEYSEGDLRRAVCTLQ 221 HSP 2 Score: 90.5077 bits (223), Expect = 1.703e-47 Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLF-GDISRDRV 424 W EKYRPKT+DDI Q EVV +L+ L G DLPHLLFYGPPGTGKTSA LA RQLF +I DRV Sbjct: 17 WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDRV 82
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_STAMF (Replication factor C small subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 6.947e-46 Identity = 77/166 (46.39%), Postives = 99/166 (59.64%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDR 923 LELNASDERGI V+R KVK FA+ V+ P +K+V+LDEAD+MT AQ AL F LI NY S+II PI SRC+ FRF PL +E+VI RLK I E V++ LE D GD+RRA+ +Q L G++T+D +++V GL R Sbjct: 78 LELNASDERGIDVIRSKVKEFARTRVAANIP-------FKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDE-EALEAIHDLSEGDMRRAINILQAAAAL-GKVTVDSVYKVVGLAHPR 234 HSP 2 Score: 76.6406 bits (187), Expect = 6.947e-46 Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRPKT+D+IVDQ E+V L++ + ++PHLLF GPPGTGKT+A A LFG+ Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGE 71
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_THEPD (Replication factor C small subunit OS=Thermofilum pendens (strain Hrk 5) GN=rfcS PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 7.535e-45 Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLV 914 LELNASDERGI V+R ++K +A RT P G P+KLVILDEAD+MT AQ AL F LI NY S+II PI SRC+ FRF+PL + + +RL+ I EG+ V G+ LE + GDLR+A+ +Q + +T + ++ G V Sbjct: 71 LELNASDERGIDVIRSRIKDYA-----RTLPIGDV--PFKLVILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDDGA-LEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRV 225 HSP 2 Score: 83.1889 bits (204), Expect = 7.535e-45 Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+++D+IVDQ E+V+ L+E + ++PHLLF GPPGTGKT+A LA A L+G+ RD Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGESWRD 68
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_SULAC (Replication factor C small subunit OS=Sulfolobus acidocaldarius GN=rfcS PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 2.173e-44 Identity = 71/163 (43.56%), Postives = 99/163 (60.74%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGL 911 FLELNASDERGI V+R+KVK FA+ S P+K+++LDEAD+MT AQ AL F L CNY+S+II PI SR + FRF PL +E+V+ RL +I +E V+ + E D GD+R+A+ +Q YG+IT++ +++V GL Sbjct: 71 FLELNASDERGIDVIRNKVKEFARTVASNN-------VPFKVILLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKGI-ETIFDITQGDMRKAINVIQAAS-AYGKITVETVYKVLGL 224 HSP 2 Score: 76.6406 bits (187), Expect = 2.173e-44 Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRPK++D+IV+Q E+V+ L++ + ++PHLLF GPPGTGKT+A LA R L+G+ Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGN 65 The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bpback to top |