FC877909

Overview
NameFC877909
Unique NameFC877909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877909_ssr241 microsatellite FC877909_ssr241:241..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11411 contig Ccv1_Contig11411:89..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC877909 vs. ExPASy Swiss-Prot
Match: FH6_ARATH (Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.012e-39
Identity = 88/153 (57.52%), Postives = 108/153 (70.59%), Query Frame = 3 
Query:  441 SVGIVTLGMLSALAFFLYRHRVKHPGESQKLV-----GANSQGIQDE---PRVPPSSFLYIGTVEPSRTSVSEA------AANGSPYHKLDSVKRSDRYRPSPELQPLPQLTRPPSQNENSPAAM----SSSDEESHDTAFYTPQCSSISNDE 845
            SVGIVTLGMLSALAFFLYRH+ KH  ++QKLV     G  S+  Q++   P    S+FLY+GTVEP+R S SE+        N SPY KL+S KRS+RYRPSPELQPLP L +PP  ++NSP+A+    SSS EE  DTAFYTP  S+IS+D+
Sbjct:  112 SVGIVTLGMLSALAFFLYRHKAKHASDTQKLVTGGGDGGGSRRFQEDSGPPTTTSSTFLYMGTVEPTRVSASESNGGTNGPVNSSPYRKLNSAKRSERYRPSPELQPLPPLAKPPQPSDNSPSALSPSSSSSGEECRDTAFYTPHGSAISSDD 264
The following BLAST results are available for this feature:
BLAST of FC877909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FH6_ARATH6.012e-3957.52Formin-like protein 6 OS=Arabidopsis thaliana GN=F... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA27DH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877909 ID=FC877909; Name=FC877909; organism=Citrus clementina; type=EST; length=861bp
AAAAAATAACACACGCAAGAGATGAATTTGGTGAAGGAAAAGAAGAAGAT
AACATCAACCCAGAAAAATTCACCATGAAAGCTTATCATTTGAACCTCTT
TTTGATCCTATCATTGTCCATTTCCTGCATAGCAGAAAGTGACATTAGCA
TTGGCATTAGCAGTTCAATTCAGAGAAGAATTCTTCACCAGCCATTGTTT
CCAGCAAGTTCACCACCACCAGGGGCTGAGCCACCGCAGTCGCCGCCGCC
GCCGCCGCCTTCACCGGAAAGCCCAGACCAGCCCTTTTTCCCCGAGGACC
CAAATGGACAAAGTCAAGATCAGAACCAACCACCACCAGCAACAACGCCT
GCAACACCATCATCGTCATCAAACGGCAGCATACCAATACCAGCAGCCAC
ACAACCAGCAAAGCCAGCCAAAAAAGTGGCAATTGCTATATCAGTTGGAA
TTGTCACACTGGGAATGTTATCAGCTCTTGCATTCTTTCTTTATCGCCAT
AGAGTTAAACATCCCGGAGAGTCTCAGAAACTCGTGGGAGCCAATTCCCA
AGGGATTCAGGATGAACCCAGAGTGCCCCCATCAAGCTTTCTGTATATAG
GAACTGTAGAGCCCAGTAGGACGTCAGTTAGTGAAGCTGCTGCGAATGGG
TCGCCATATCATAAACTCGATTCTGTTAAAAGATCAGATCGGTACAGGCC
AAGCCCTGAATTGCAACCACTCCCACAACTGACCAGGCCTCCTTCTCAGA
ATGAGAATTCACCGGCTGCTATGTCATCATCGGATGAGGAGAGTCATGAC
ACGGCGTTTTATACACCACAATGCTCTTCTATCAGCAATGATGAATATTG
CACGCCGGTTG
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