FC877911
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2) HSP 1 Score: 338.576 bits (867), Expect = 2.748e-92 Identity = 174/260 (66.92%), Postives = 199/260 (76.54%), Query Frame = 2 Query: 95 MVFSSAVLANPPCVCFPRK---FPVRCSSLPV--SAASQLRSTQFDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859 M+FS + + P K P++ S + S++S S FDL+TYWTTLI EI+Q L++AI VK+P IYE+MRYSVLA+G KRAPPVMCVAACELFG +R+AAFPTACALEMVHAASLIHDDLPCMDDDP RRG+PSNHTVYG +AILAGDALFPL FQHIVSHT I EIAR VGSTGMAAGQ++DLEG P + FVQEKKFG M ECSAVCGG L GA +DE+QSLRRYGRAVG+LYQVV Sbjct: 1 MLFSGSAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVV 260
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 199.519 bits (506), Expect = 1.992e-50 Identity = 103/242 (42.56%), Postives = 148/242 (61.16%), Query Frame = 2 Query: 167 SSLPVSAASQLRSTQ---FDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859 SS V+ LR ++ FD +Y T +++ L+ A+ ++ P +I+E+MRYS+LA G KR PV+C+AACEL G A P ACA+EM+H SLIHDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+H+ S T + E+A+A+G+ G+ AGQ +D+ E +EF+ K + E SAV G + G DDEI+ LR++ R +G+L+QVV Sbjct: 56 SSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVV 296
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 3.757e-49 Identity = 107/256 (41.80%), Postives = 151/256 (58.98%), Query Frame = 2 Query: 152 FPVRCSSLPVSAASQLRSTQ--------------FDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859 F R S P+S+ S + + + FD K+Y I+Q LE AI ++ P +I+ESMRYS+LA G KR P +C+AACEL G N A P ACA+EM+H SLIHDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+HI T + E+A+A+G+ G+ AGQ +D+ E + +EF+ K ++ E + V G L G D+E++ LR+Y R +G+L+QVV Sbjct: 43 FAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGG-KRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVST--LNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVV 295
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 4.907e-49 Identity = 100/225 (44.44%), Postives = 145/225 (64.44%), Query Frame = 2 Query: 203 STQFDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDL--EGEPNL----VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859 S+ FD K Y +++ LE A+ V+ P +I+ESMRYS+LA G KR P++C+AACELFG A P+ACA+EM+H SL+HDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+HI + T + E+A+ +GS G+ AGQ +D+ EG ++ +EF+ K + E S V G + GA+D++I LR++ R +G+L+QVV Sbjct: 61 SSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGG-KRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATAT--KGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVV 282
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.435e-48 Identity = 97/227 (42.73%), Postives = 141/227 (62.11%), Query Frame = 2 Query: 203 STQFDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859 S+ FD +Y +++ L+ A+ ++ P +I+E+MRYS+LA G KR PV+C+AACEL G A P CA+EM+H SLIHDDLPCMD+D RRG+P+NH VYG D+A+LAGDAL F+H+ S T + E+A+A+G+ G+ AGQ +D+ E ++F+ K + E SAV GG + G D+EI+ LR++ R +G+L+QVV Sbjct: 67 SSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASAT-SSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVV 291
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 9.254e-48 Identity = 98/222 (44.14%), Postives = 141/222 (63.51%), Query Frame = 2 Query: 212 FDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859 F+ K Y T +++ L++AI VK P I+E+MRYS+LA G KR P++C+AACEL G N+ A ACA+EM+H SLIHDDLPCMD+D RRG+P+NH +YG D+A+LAGD+L F+HIV+ T +AE+A+++G+ G+ AGQ D++ N +EF+ K + E S V G L G + E++ LRR+ R +G+L+QVV Sbjct: 76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGG-KRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNST--AGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVV 294
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.299e-45 Identity = 95/237 (40.08%), Postives = 142/237 (59.92%), Query Frame = 2 Query: 173 LPVSAASQLRSTQFDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGE---PNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859 +P ++ FD K Y ++ L+ ++ ++ P + E++RYS+LA G KR P++C+A CEL G + A ACA+EM+H +SLIHDDLPCMD+ RRG+P+NH VYG D+A+LAGDAL L F+H ++ + E+ARA+G+TG+ AGQ +DL E P+ V EF+ K + E +AV G + G ++EI+ LR+Y R +G+L+QVV Sbjct: 51 IPPEGKCNDHNSAFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGG-KRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEH-MTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVV 285
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 1.059e-43 Identity = 91/224 (40.62%), Postives = 137/224 (61.16%), Query Frame = 2 Query: 212 FDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859 F+ Y + +++ LE+AI V P +I+E+MRY++LA G KR P++C+A+CEL G AA P ACA+EM+H SLI DDLPCMD+D RRG+P+ H VYG +AIL+G AL L F+H+ + + E+AR++G+ G+ AGQ +D+ E +EF+ K + E +AV G + G D+EI+S+R++ R +G+L+QVV Sbjct: 83 FEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAG-KRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMTT----AEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVV 301
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.096e-40 Identity = 90/224 (40.18%), Postives = 130/224 (58.04%), Query Frame = 2 Query: 206 TQFDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEP------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859 T F+L TY ++ L K+I P IY+S+RYS L+ G KR P++C+A+CEL G A PTACALEM+H SLIHDDLP MD+D RRG+P+NH +YG D+AILAGDAL F+ I + T IA++A +V ++G+ GQ +DL E + F+ K G + E + + G LAGA + ++ RY + +G+ +Q++ Sbjct: 6 TNFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYS-LSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQT--KNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQII 226
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.869e-40 Identity = 88/224 (39.29%), Postives = 131/224 (58.48%), Query Frame = 2 Query: 212 FDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859 FD K Y + I++ L++AI + P I+++MRY++LA G KR P++C+AACEL G A ACA+EM+H SLI DDLPCMD+D RRG+P+ H V+G +AIL+G AL L F+H+ + E+A+++G+ G+ AGQ DL E +E++ K G + E SAV G + G + EI+ +R + R +G+L+QVV Sbjct: 79 FDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGG-KRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLTE----ADVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVV 297 The following BLAST results are available for this feature:
BLAST of FC877911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877911 ID=FC877911; Name=FC877911; organism=Citrus clementina; type=EST; length=859bpback to top |