FC877911

Overview
NameFC877911
Unique NameFC877911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length859
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10601 contig Ccv1_Contig10601:37..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 2.748e-92
Identity = 174/260 (66.92%), Postives = 199/260 (76.54%), Query Frame = 2
Query:   95 MVFSSAVLANPPCVCFPRK---FPVRCSSLPV--SAASQLRSTQFDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859
            M+FS + +        P K    P++ S   +  S++S   S  FDL+TYWTTLI EI+Q L++AI VK+P  IYE+MRYSVLA+G KRAPPVMCVAACELFG +R+AAFPTACALEMVHAASLIHDDLPCMDDDP RRG+PSNHTVYG  +AILAGDALFPL FQHIVSHT             I EIAR VGSTGMAAGQ++DLEG P  + FVQEKKFG M ECSAVCGG L GA +DE+QSLRRYGRAVG+LYQVV
Sbjct:    1 MLFSGSAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVV 260          
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.992e-50
Identity = 103/242 (42.56%), Postives = 148/242 (61.16%), Query Frame = 2
Query:  167 SSLPVSAASQLRSTQ---FDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859
            SS  V+    LR ++   FD  +Y  T    +++ L+ A+ ++ P +I+E+MRYS+LA G KR  PV+C+AACEL G     A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    F+H+ S T             + E+A+A+G+ G+ AGQ +D+  E           +EF+   K   + E SAV G  + G  DDEI+ LR++ R +G+L+QVV
Sbjct:   56 SSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVV 296          
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.757e-49
Identity = 107/256 (41.80%), Postives = 151/256 (58.98%), Query Frame = 2
Query:  152 FPVRCSSLPVSAASQLRSTQ--------------FDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859
            F  R S  P+S+ S + + +              FD K+Y       I+Q LE AI ++ P +I+ESMRYS+LA G KR  P +C+AACEL G N   A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    F+HI   T             + E+A+A+G+ G+ AGQ +D+  E +       +EF+   K  ++ E + V G  L G  D+E++ LR+Y R +G+L+QVV
Sbjct:   43 FAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGG-KRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVST--LNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVV 295          
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.907e-49
Identity = 100/225 (44.44%), Postives = 145/225 (64.44%), Query Frame = 2
Query:  203 STQFDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDL--EGEPNL----VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859
            S+ FD K Y       +++ LE A+ V+ P +I+ESMRYS+LA G KR  P++C+AACELFG     A P+ACA+EM+H  SL+HDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    F+HI + T             + E+A+ +GS G+ AGQ +D+  EG  ++    +EF+   K   + E S V G  + GA+D++I  LR++ R +G+L+QVV
Sbjct:   61 SSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGG-KRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATAT--KGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVV 282          
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.435e-48
Identity = 97/227 (42.73%), Postives = 141/227 (62.11%), Query Frame = 2
Query:  203 STQFDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859
            S+ FD  +Y       +++ L+ A+ ++ P +I+E+MRYS+LA G KR  PV+C+AACEL G     A P  CA+EM+H  SLIHDDLPCMD+D  RRG+P+NH VYG D+A+LAGDAL    F+H+ S T             + E+A+A+G+ G+ AGQ +D+  E           ++F+   K   + E SAV GG + G  D+EI+ LR++ R +G+L+QVV
Sbjct:   67 SSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASAT-SSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVV 291          
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.254e-48
Identity = 98/222 (44.14%), Postives = 141/222 (63.51%), Query Frame = 2
Query:  212 FDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859
            F+ K Y T     +++ L++AI VK P  I+E+MRYS+LA G KR  P++C+AACEL G N+  A   ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH +YG D+A+LAGD+L    F+HIV+ T             +AE+A+++G+ G+ AGQ  D++   N       +EF+   K   + E S V G  L G  + E++ LRR+ R +G+L+QVV
Sbjct:   76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGG-KRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNST--AGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVV 294          
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.299e-45
Identity = 95/237 (40.08%), Postives = 142/237 (59.92%), Query Frame = 2
Query:  173 LPVSAASQLRSTQFDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGE---PNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859
            +P        ++ FD K Y       ++  L+ ++ ++ P  + E++RYS+LA G KR  P++C+A CEL G +   A   ACA+EM+H +SLIHDDLPCMD+   RRG+P+NH VYG D+A+LAGDAL  L F+H ++               + E+ARA+G+TG+ AGQ +DL  E   P+ V     EF+   K   + E +AV G  + G  ++EI+ LR+Y R +G+L+QVV
Sbjct:   51 IPPEGKCNDHNSAFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGG-KRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEH-MTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVV 285          
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.059e-43
Identity = 91/224 (40.62%), Postives = 137/224 (61.16%), Query Frame = 2
Query:  212 FDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859
            F+   Y  +    +++ LE+AI V  P +I+E+MRY++LA G KR  P++C+A+CEL G    AA P ACA+EM+H  SLI DDLPCMD+D  RRG+P+ H VYG  +AIL+G AL  L F+H+ +               + E+AR++G+ G+ AGQ +D+  E           +EF+   K   + E +AV G  + G  D+EI+S+R++ R +G+L+QVV
Sbjct:   83 FEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAG-KRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMTT----AEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVV 301          
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.096e-40
Identity = 90/224 (40.18%), Postives = 130/224 (58.04%), Query Frame = 2
Query:  206 TQFDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEP------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859
            T F+L TY       ++  L K+I    P  IY+S+RYS L+ G KR  P++C+A+CEL G     A PTACALEM+H  SLIHDDLP MD+D  RRG+P+NH +YG D+AILAGDAL    F+ I + T             IA++A +V ++G+  GQ +DL  E         + F+   K G + E + + G  LAGA + ++    RY + +G+ +Q++
Sbjct:    6 TNFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYS-LSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQT--KNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQII 226          
BLAST of FC877911 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.869e-40
Identity = 88/224 (39.29%), Postives = 131/224 (58.48%), Query Frame = 2
Query:  212 FDLKTYWTTLIAEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTXXXXXXXXXXXXXIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 859
            FD K Y  +    I++ L++AI +  P  I+++MRY++LA G KR  P++C+AACEL G     A   ACA+EM+H  SLI DDLPCMD+D  RRG+P+ H V+G  +AIL+G AL  L F+H+                 + E+A+++G+ G+ AGQ  DL  E           +E++   K G + E SAV G  + G  + EI+ +R + R +G+L+QVV
Sbjct:   79 FDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGG-KRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLTE----ADVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVV 297          
The following BLAST results are available for this feature:
BLAST of FC877911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
GGR_ARATH2.748e-9266.92Geranylgeranyl pyrophosphate synthase-related prot... [more]
GGPP1_ARATH1.992e-5042.56Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_HEVBR3.757e-4941.80Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO4.907e-4944.44Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL2.435e-4842.73Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN9.254e-4844.14Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH4.299e-4540.08Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP2_ARATH1.059e-4340.63Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
CRTE_CYAPA1.096e-4040.18Geranylgeranyl pyrophosphate synthetase homolog OS... [more]
GGPP4_ARATH1.869e-4039.29Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DA10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877911 ID=FC877911; Name=FC877911; organism=Citrus clementina; type=EST; length=859bp
TGTTTCCTTAGGCTAAAATCTTTACGCCGGAACAATCACAAACGCTTCAA
TTCAACCTGTACTCCAAAACACCAAAGAAACAGATTATAAAAAAATGGTT
TTTTCATCAGCAGTATTAGCAAACCCGCCATGTGTTTGCTTTCCAAGAAA
ATTCCCCGTTCGTTGTTCGTCTTTACCAGTCTCTGCTGCAAGCCAGTTGA
GATCTACCCAGTTTGATTTGAAGACTTACTGGACTACCCTTATTGCTGAA
ATTGATCAGAATTTGGAAAAAGCAATCACAGTTAAGTACCCAGAGCAGAT
CTATGAATCCATGAGATATTCGGTGTTAGCCAAGGGAACTAAGCGGGCGC
CGCCTGTCATGTGTGTGGCAGCTTGCGAGCTCTTTGGTGTTAATCGGATT
GCAGCTTTTCCCACAGCTTGCGCTCTTGAAATGGTCCATGCTGCTTCATT
GATTCATGACGATCTTCCTTGCATGGATGATGACCCATCACGCCGAGGTC
AGCCCTCAAACCACACAGTCTATGGTGTTGACATAGCTATCCTTGCAGGG
GATGCACTCTTCCCCCTTGGTTTCCAACACATTGTGTCCCACACACCCCC
CCGTCTCGTGCCTGAGCCCCGTGTCCTTCGTGTGATTGCTGAGATTGCCC
GTGCTGTGGGGTCCACTGGCATGGCTGCCGGGCAGTTCCTTGATCTTGAG
GGTGAACCCAACTTGGTTGAATTTGTCCAGGAGAAAAAATTCGGTGAAAT
GAGTGAGTGCTCAGCGGTGTGTGGTGGGTTCTTGGCTGGTGCAGATGATG
ATGAGATACAGAGCTTGCGGAGGTATGGAAGAGCTGTTGGGGTATTATAC
CAAGTAGTT
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