FC877913

Overview
NameFC877913
Unique NameFC877913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877913_ssr83 microsatellite FC877913_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10192 contig Ccv1_Contig10192:48..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 4.073e-42
Identity = 92/181 (50.83%), Postives = 111/181 (61.33%), Query Frame = 2
Query:  164 DPYS-NMKFSPXXXXXXXXXXXXXXXMGFFSIYIRHCSDS-SNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAV---AAETPQETQPQA 691
            DPY+ +   SP               MGFF++YIRHC+ +   SV                  LD E I+TFPTFVYS+VKT K+GKGALECA+CLNEFEDDETLRL+PKCDHVFHP CI AWL+ H TCPVCR+NLA    E TP+P  +   E DLEAQ  +AV     E P+   P++
Sbjct:   33 DPYAYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLA----EQTPEPEVV--VETDLEAQQQSAVPVPVVELPRVKFPRS 207          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.185e-41
Identity = 91/186 (48.92%), Postives = 110/186 (59.14%), Query Frame = 2
Query:  140 SPESPGSVD-PYSNMKFSPXXXXXXXXXXXXXXXMGFFSIYIRHCSDSSNS-VIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQN-----DAAVAAETPQE 676
            S   PG  + PY+  + SP               MGFFSIY RHCS   ++ V                  LD  V++TFPTF+YSDVKT K+GKG LECA+CLNEFEDDETLRL+PKCDHVFHP CIDAWLE+H TCPVCR+NLA +  E   +  E G +E DLE Q      +  V A  P++
Sbjct:   29 SQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAE--GESVEPGGTEPDLELQQVVVNPEPVVTAPVPEQ 212          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.964e-34
Identity = 69/120 (57.50%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  239 MGFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXX---LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 589
            +GFFS+YIR C +    +                     LD  +I+TFPTF YS VKTL++GK ALEC+VCLNEFEDDETLRLIPKC HVFHP CIDAWL SHTTCP+CR++L   PGE+
Sbjct:   77 LGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGES 196          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.006e-32
Identity = 78/184 (42.39%), Postives = 96/184 (52.17%), Query Frame = 2
Query:  164 DPYSNMKFSPXXXXXXXXXXXXXXXMGFFSIYIRHCSDSSNSV-IXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQAQCSQPPE 712
            D      FSP               +G  S+Y+R C   +  +                   LD  VI+TFPTF YS VKTL++GK ALEC VCLNEFEDDETLRLIP+C HVFHP CIDAWL S TTCP+CR+NL   PGE+        SSE+   A+     +  TP +   +   + P E
Sbjct:   28 DDEGRTSFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESV-------SSEIPGLARETGQNSLRTPIDDNRKRVLTSPDE 204          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.164e-29
Identity = 53/83 (63.86%), Postives = 69/83 (83.13%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 595
            L++EVI++FPTF+YS+VK LK+GKG +ECA+CL+EFED ETLR +P C H FH  CID WL S +TCPVCR+NL+ +PGE+ P
Sbjct:   95 LEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGESYP 177          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.809e-29
Identity = 71/170 (41.76%), Postives = 91/170 (53.53%), Query Frame = 2
Query:  242 GFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQAQCSQPPEPQVISGNFAKSNA 751
            G  S+YIRHC+ S+                     LD  V+++FP F YS VK  K+G   LECA+CLNE ED ET+RL+P C+H+FH +CID WL SH TCPVCRSNL ++  +  P   + G   V L A  D  V      ET   A+         ISG F +SN+
Sbjct:   60 GLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNK--PGDEDDG---VPLAAMRDHVV---VDIETVEVAKSHHRRLSSEISGKFPRSNS 221          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.457e-28
Identity = 54/110 (49.09%), Postives = 75/110 (68.18%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAVAAETPQE 676
            +D++VI++FP F+YS+VK  K+G G +ECA+CL EFED+E LR +P C H FH  CID WL S +TCPVCR+NL+ + G++ P PS      +D+E  N      E+P E
Sbjct:   92 IDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDSFPHPS------MDVETGNAQRGVQESPDE 195          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.272e-27
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQND 646
            L++E++++FP F+YS+VK LK+GKG +ECA+CL+EF D ETLR +P C H FH  CID WL S +TCP CR+NL+ +PGE+ P P        DLE  N+
Sbjct:   95 LEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKPGESYPYPI------TDLETGNE 188          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.834e-27
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 583
            L ++VI++FP+F+YS VK LK+GKG +ECA+CLNEFED+ETLRL+P C H FH  CID WL S +TCPVCR++L  +PG
Sbjct:  100 LGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPG 178          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.313e-27
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 568
            LD E I+TFPTF+YS+VK +++GKG +ECAVCL EFEDDETLRL+P C HVFH +C+D WL  H+TCP+CR++L
Sbjct:  107 LDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADL 180          
The following BLAST results are available for this feature:
BLAST of FC877913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ATL5H_ARATH4.073e-4250.83RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL3B_ARATH1.185e-4148.92RING-H2 finger protein ATL3B OS=Arabidopsis thalia... [more]
ATL1N_ARATH6.964e-3457.50RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL1C_ARATH1.006e-3242.39RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]
ATL4C_ARATH5.164e-2963.86Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL4O_ARATH8.809e-2941.76RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
ATL4D_ARATH7.457e-2849.09Putative RING-H2 finger protein ATL4D OS=Arabidops... [more]
ATL4B_ARATH1.272e-2753.00Putative RING-H2 finger protein ATL4B OS=Arabidops... [more]
ATL1H_ARATH2.834e-2763.29RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]
ATL2G_ARATH6.313e-2766.22RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877913 ID=FC877913; Name=FC877913; organism=Citrus clementina; type=EST; length=813bp
CAACTTTCTCTCCACATCTCATGCAATAATGGGGTCACGACTCTTATTTT
ACTCCGCGAAACATGGGACCAATCCCCTTTCTCTCCTCCTCCTCATGCTC
CTCGTCGCCAACGCGCTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGTC
CCCGGGCTCCGTCGACCCCTACTCCAACATGAAATTCAGCCCCTCACTCG
CCATAATAATCGTCGTGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTC
TCCATCTACATCCGCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCC
CTCCGGCGCCGGAGGCAACCGCTCCAGGCGCGGCGCCGCCCGTGGCCTCG
ACCGCGAGGTCATCGACACTTTCCCGACCTTCGTCTACTCCGACGTCAAG
ACGCTGAAGGTCGGCAAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGA
GTTCGAGGACGACGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTCT
TCCACCCCGAGTGTATCGACGCCTGGCTTGAATCGCACACCACGTGTCCC
GTTTGCCGCTCGAATTTGGCCTCTGAACCCGGTGAGACAACTCCTCAACC
CAGTGAGCTGGGCTCATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCG
CGGTAGCAGCAGAGACTCCACAAGAAACACAACCACAGGCACAATGTTCA
CAACCACCGGAACCTCAAGTTATCAGCGGCAACTTTGCTAAATCAAACGC
TTAATAAGAACCGTACACGCGGCTCAAGATCCGGGAGGGCACGAAAATTC
CCCCCGGTCTCAC
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