FC877915

Overview
NameFC877915
Unique NameFC877915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length927
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877915_ssr276 microsatellite FC877915_ssr276:276..287. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877915_ssr427 microsatellite FC877915_ssr427:427..444. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11658 contig Ccv1_Contig11658:373..1306. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.673e-21
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:    1 PSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            P+KDRHTKVDGRGRRIRMPA+CAARVFQLTRELGHKSDGETIEWLLQQAE
Sbjct:   62 PTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAE 111          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    4 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            +KDRHTKVDGRGRRIRMPA+CAARVFQLTRELGHKSDGETIEWLLQQAE
Sbjct:   60 TKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAE 108          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    4 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            +KDRHTKVDGRGRRIRMPA+CAARVFQLTRELGHKSDGETIEWLLQQAE
Sbjct:  117 TKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAE 165          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: PCF3_ORYSJ (Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:    1 PSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            P+KDRHTKV+GRGRRIRMPA+CAARVFQLTRELGHK+DGETIEWLLQQAE
Sbjct:  151 PTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAE 200          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP23_ARATH (Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.850e-20
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:    1 PSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            PSKDRH KVDGRGRRIRMPA+CAARVFQLTREL HKSDGETIEWLLQQAE
Sbjct:   54 PSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAE 103          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.155e-20
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:    1 PSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            PSKDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE
Sbjct:   30 PSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 79          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.155e-20
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    4 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            +KDRHTKV+GRGRRIRMPA+CAARVFQLTRELGHKSDGETIEWLLQQAE
Sbjct:   52 TKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAE 100          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.030e-20
Identity = 44/50 (88.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:    1 PSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            P+KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE
Sbjct:   38 PAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 87          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.181e-20
Identity = 44/49 (89.80%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    4 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            +KDRHTKV+GRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQAE
Sbjct:   78 NKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAE 126          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.015e-18
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1
Query:    4 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            SKDRHTKV+GRGRRIRMPA CAARVFQLTRELGHKSDGETI WLL++AE
Sbjct:   57 SKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAE 105          
The following BLAST results are available for this feature:
BLAST of FC877915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TCP22_ARATH1.673e-2196.00Transcription factor TCP22 OS=Arabidopsis thaliana... [more]
TCP8_ARATH1.085e-2095.92Transcription factor TCP8 OS=Arabidopsis thaliana ... [more]
TCP14_ARATH1.085e-2095.92Transcription factor TCP14 OS=Arabidopsis thaliana... [more]
PCF3_ORYSJ1.085e-2092.00Transcription factor PCF3 OS=Oryza sativa subsp. j... [more]
TCP23_ARATH1.850e-2094.00Transcription factor TCP23 OS=Arabidopsis thaliana... [more]
TCP21_ARATH3.155e-2090.00Transcription factor TCP21 OS=Arabidopsis thaliana... [more]
TCP15_ARATH3.155e-2093.88Transcription factor TCP15 OS=Arabidopsis thaliana... [more]
TCP7_ARATH7.030e-2088.00Transcription factor TCP7 OS=Arabidopsis thaliana ... [more]
TCP20_ARATH9.181e-2089.80Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
TCP19_ARATH1.015e-1889.80Transcription factor TCP19 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877915 ID=FC877915; Name=FC877915; organism=Citrus clementina; type=EST; length=927bp
CCGTCTAAGGACCGGCACACCAAAGTGGACGGCCGGGGGCGACGGATACG
GATGCCGGCAGTATGTGCAGCTAGGGTTTTCCAGTTAACAAGAGAATTAG
GGCACAAATCAGATGGTGAAACCATTGAGTGGCTGCTGCAACAAGCTGAG
CCTGCCATTATAGCTACCACGGGCACCGGCACCATTCCTGCTAATTTTTC
AACTCTTAATATTTCTTTACGTAGCAGCGGCAGCTCCTCTCTTTCAGCGC
CCGCTTCTAAATCATCACTCCACAGCGCCGCCGCCGCTTTAGCACTTTAC
AACAACACCACCAACAACAACATTAATAGTGGAGGTTTTTTTTGTGGGGC
GTTTCAGCAGCAGCAACAATTGTTGTATAATATTCCTGAAACAGCGGCTG
CAACAGCAAGTGCTTGTGCTTCTTCATCTTCTTCTTCTTCTTCTGCTTCA
GCAGCTGCTGCCGTGGCGGCACCTGCAGCTGCTATGTGGGCAGTGGCACC
GGCTGCTGCTTCTAATGGGGGCAACGGCTTCTGGATGCTACCGGAGGCAC
AGATGTGGACTTTTCCCGCTCATTATTCGGGTCTAGGCCGGCTGAGTTCT
GTTCAAATGGGCGGTCATCAGCAGCAGCTGGGAGTAGGAGTTCTTGCAGA
GAGTCTCAATAATAACATGGGCGTTTTGGGTGGTGGCGTTGGCTCTAATA
ATGCTTATAGAGCTCCTGGTTTGGCCATGAATATTTTTGGTCAAAATCAT
CAAGAANATAATAATGATAACGATAATAATAACAATAATAATCAGCAGAC
TACTCAAGCCAGTAATAGCGGAGATGAAGAGTCTTAATAATTATATTAAT
CATTTATATGCTTTATTTTTCTCAGTGCTTGTAAATGTTTTTTTTTTCCT
TTCTCTTTACTTTTACCTAAGGCTAGC
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