FC877916

Overview
NameFC877916
Unique NameFC877916
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length891
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6241 contig Ccv1_Contig6241:1..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877916 vs. ExPASy Swiss-Prot
Match: IMB1_SCHPO (Importin subunit beta-1 OS=Schizosaccharomyces pombe GN=kap95 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.046e-49
Identity = 111/245 (45.31%), Postives = 148/245 (60.41%), Query Frame = 3
Query:  159 QILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 890
            + L    S D  VR  AE+ L+     +   +++ LA EL ND      R  AGL LKNA+ A+E+ RK E  Q W SL   +K Q+KS  L+TL S  H A  +A+Q+VA +A  EL   QWP+L+  L++N+ +  P   KQ +L+T+GYICE VS + +     N ILTAVV G    E +  VRLAA  ALY++L F + NF+N+ ER+YIM+VVCEAT SPE  I+ AAF CLV I   Y
Sbjct:    5 EFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLALKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELATNQWPDLMVTLVANVGEGQPSALKQHSLQTIGYICESVSPEVLSAQS-NAILTAVVAGARKEEPDAAVRLAALGALYDSLEFVRENFNNEYERNYIMQVVCEATQSPEASIQTAAFGCLVKIMHLY 248          
BLAST of FC877916 vs. ExPASy Swiss-Prot
Match: IMB1_MOUSE (Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.863e-47
Identity = 103/249 (41.37%), Postives = 160/249 (64.26%), Query Frame = 3
Query:  150 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 890
            E+  IL    S D    + A++ L++   +NLP FL+ L+  L N      +R  AGL +KN+L +K+   K +  QRWL++D++ + ++K+++L+TL +  +   S+ASQ VA +A  E+P  QWPELI  L++N+       H K++TLE +GYIC+++  + + QD  N+ILTA++QGM   E +N+V+LAAT AL N+L F +ANF  + ER +IM+VVCEAT  P+ ++R AA + LV I S Y
Sbjct:    2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248          
BLAST of FC877916 vs. ExPASy Swiss-Prot
Match: IMB1_HUMAN (Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.863e-47
Identity = 103/249 (41.37%), Postives = 160/249 (64.26%), Query Frame = 3
Query:  150 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 890
            E+  IL    S D    + A++ L++   +NLP FL+ L+  L N      +R  AGL +KN+L +K+   K +  QRWL++D++ + ++K+++L+TL +  +   S+ASQ VA +A  E+P  QWPELI  L++N+       H K++TLE +GYIC+++  + + QD  N+ILTA++QGM   E +N+V+LAAT AL N+L F +ANF  + ER +IM+VVCEAT  P+ ++R AA + LV I S Y
Sbjct:    2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248          
BLAST of FC877916 vs. ExPASy Swiss-Prot
Match: IMB1_RAT (Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.259e-44
Identity = 101/249 (40.56%), Postives = 158/249 (63.45%), Query Frame = 3
Query:  150 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 890
            E+  IL    S D    + A++ L++   +NLP FL+ L+  L N      +R  AGL ++  L +K+   K +  QRWL++D++ + ++K+++L+TL +  +   S+ASQ VA +A  E+P  QWPELI  L++N+       H K++TLE +GYIC+++  + + QD  N+ILTA++QGM   E +N+V+LAAT AL N+L F +ANF  + ER +IM+VVCEAT  P+ ++R AA + LV I S Y
Sbjct:    2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIR-LLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 247          
BLAST of FC877916 vs. ExPASy Swiss-Prot
Match: IMB_DROME (Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.048e-37
Identity = 97/252 (38.49%), Postives = 142/252 (56.35%), Query Frame = 3
Query:  141 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNI--HQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 890
            ++ ++  IL    S D      A+  L+Q    NLP FL +L+  LVN      +R  AGL LKN L +K++    +   RW    S ++  IK+ IL  L +  +   S A+Q VA VA IELP  +WP LI  L++ +         +++ LE +GYIC+++    +E    N +LTA++ GM   E +N VRLAAT AL+N+L F ++NF  DMER++IM VVCEAT   + +I  AA +CLV I + Y
Sbjct:    5 IAMQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAGLQLKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNILAALGTE-NTRPSCAAQCVAYVAVIELPINRWPMLIQTLVNKVVSEGSSEMHRESALEAIGYICQDIRFGVMENQS-NDVLTAIIHGMRKVEPSNHVRLAATTALHNSLEFTKSNFEKDMERNFIMEVVCEATQCQDSQICVAALQCLVKIMTLY 254          
BLAST of FC877916 vs. ExPASy Swiss-Prot
Match: IMB1_YEAST (Importin subunit beta-1 OS=Saccharomyces cerevisiae GN=KAP95 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.957e-36
Identity = 97/255 (38.04%), Postives = 148/255 (58.04%), Query Frame = 3
Query:  144 SAEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIH-QLPPHTKQATLETLGYICEEVSSDAVEQDHV---NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 890
            +AE  Q+L N+  S D  +R  +E  LK+    N   F    +  L+++   +E R LA L LKN L +K+  +  +  QRW++ +    K QIK+  L  L S      + A+Q++A +A IELPH  WPEL+  ++ N   + P + K+A+L  LGY+CE  S+D   Q  V   N IL A+VQG  ++E++  VRLAA  AL ++L F + N   + ER+Y+M+VVCEAT + +++++ AAF CL  I S Y
Sbjct:    3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE--SADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSLY 255          
The following BLAST results are available for this feature:
BLAST of FC877916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
IMB1_SCHPO3.046e-4945.31Importin subunit beta-1 OS=Schizosaccharomyces pom... [more]
IMB1_MOUSE4.863e-4741.37Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 P... [more]
IMB1_HUMAN4.863e-4741.37Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 P... [more]
IMB1_RAT2.259e-4440.56Importin subunit beta-1 OS=Rattus norvegicus GN=Kp... [more]
IMB_DROME2.048e-3738.49Importin subunit beta OS=Drosophila melanogaster G... [more]
IMB1_YEAST2.957e-3638.04Importin subunit beta-1 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA60DA11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877916 ID=FC877916; Name=FC877916; organism=Citrus clementina; type=EST; length=891bp
ACATTAGACACTCTCTCCTTGCTTTTGTTGTCACTCTGCTAGGGTTTCAG
AGTCGCCGCTTCTGTTTTTTTCTTGTCCCGGAATAGATCGGTCACTCGCT
TGTATTCCTGAGTCAACTCATCAACTCAGCCTGAATTCAAATGTCTGCGG
AAGTCACTCAAATTCTCCTAAATGCACAATCAGTAGATGGCACCGTGCGT
AAGCAAGCAGAAGAAAGCCTAAAACAATATCAGGAGCAAAATCTCCCAGG
GTTTTTGCTTTCTCTGGCAGGAGAATTGGTTAATGATGAGAAGCCCGTTG
AGAGTCGTAAATTAGCAGGTTTGATCCTGAAGAATGCATTGGATGCCAAA
GAACAGCATCGGAAGTTTGAGCTTGTACAGAGATGGTTGTCATTGGATTC
CTCTGTGAAGGCCCAGATCAAATCGTTCATACTGAAGACCCTCTCTTCTC
CTGCTCATGATGCACGGTCAACAGCGTCTCAAGTTGTTGCAAAGGTAGCA
GGTATTGAGTTGCCTCATAAGCAGTGGCCTGAACTAATTGGAGCTCTTTT
ATCAAATATTCATCAGCTCCCGCCCCATACCAAACAAGCCACCCTTGAAA
CTCTTGGATATATTTGTGAAGAAGTTTCCTCAGATGCGGTGGAACAGGAT
CATGTAAATAAGATACTTACAGCTGTAGTCCAAGGTATGAATGCTTCTGA
GAGTAACAATGATGTCAGACTGGCTGCTACCCGAGCATTGTATAATGCTT
TGGGTTTTGCTCAGGCAAATTTCTCTAATGATATGGAACGCGACTACATC
ATGAGAGTTGTTTGTGAGGCAACCCTTTCTCCGGAAGTGAAGATTCGACA
GGCAGCTTTTGAGTGTTTGGTTGCGATCTCTTCAACCTACT
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