FC877923

Overview
NameFC877923
Unique NameFC877923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877923_ssr218 microsatellite FC877923_ssr218:218..235. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877923_ssr358 microsatellite FC877923_ssr358:358..372. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9011 contig Ccv1_Contig9011:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877923 vs. ExPASy Swiss-Prot
Match: RING2_RAT (E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.595e-21
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3 
Query:  435 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 686
            ++V    +  E+ CPICL +++ T T  ECLHRFC +CI  A+R GN ECP CR    S+RSLR D N+DALI+ +YP  D+YE
Sbjct:   38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 121
[Close]
BLAST of FC877923 vs. ExPASy Swiss-Prot
Match: RING2_PONAB (E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.595e-21
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3 
Query:  435 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 686
            ++V    +  E+ CPICL +++ T T  ECLHRFC +CI  A+R GN ECP CR    S+RSLR D N+DALI+ +YP  D+YE
Sbjct:   38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 121
[Close]
BLAST of FC877923 vs. ExPASy Swiss-Prot
Match: RING2_MOUSE (E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.595e-21
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3 
Query:  435 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 686
            ++V    +  E+ CPICL +++ T T  ECLHRFC +CI  A+R GN ECP CR    S+RSLR D N+DALI+ +YP  D+YE
Sbjct:   38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 121
[Close]
BLAST of FC877923 vs. ExPASy Swiss-Prot
Match: RING2_HUMAN (E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.595e-21
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3 
Query:  435 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 686
            ++V    +  E+ CPICL +++ T T  ECLHRFC +CI  A+R GN ECP CR    S+RSLR D N+DALI+ +YP  D+YE
Sbjct:   38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 121
[Close]
BLAST of FC877923 vs. ExPASy Swiss-Prot
Match: RNG2B_XENLA (E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-B PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.046e-20
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:  435 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 686
            + V    +  E+ CPICL +++ T T  ECLHRFC +CI  A+R GN ECP CR    S+RSLR D N+DALI+ +YP  D+YE
Sbjct:   34 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 117
[Close]
BLAST of FC877923 vs. ExPASy Swiss-Prot
Match: RNG2A_XENLA (E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.046e-20
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:  435 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 686
            + V    +  E+ CPICL +++ T T  ECLHRFC +CI  A+R GN ECP CR    S+RSLR D N+DALI+ +YP  D+YE
Sbjct:   35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 118
[Close]
BLAST of FC877923 vs. ExPASy Swiss-Prot
Match: RING2_DANRE (E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.046e-20
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:  435 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 686
            + V    +  E+ CPICL +++ T T  ECLHRFC +CI  A+R GN ECP CR    S+RSLR D N+DALI+ +YP  D+YE
Sbjct:   38 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 121
[Close]
BLAST of FC877923 vs. ExPASy Swiss-Prot
Match: RING1_RAT (E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.043e-20
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:  435 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 686
            + V    +  E+ CPICL +++ T T  ECLHRFC +CI  A+R GN ECP CR    S+RSLR D N+DALI+ +YP  ++YE
Sbjct:   35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 118
[Close]
BLAST of FC877923 vs. ExPASy Swiss-Prot
Match: RING1_PANTR (E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.043e-20
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:  435 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 686
            + V    +  E+ CPICL +++ T T  ECLHRFC +CI  A+R GN ECP CR    S+RSLR D N+DALI+ +YP  ++YE
Sbjct:    6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 89
[Close]
BLAST of FC877923 vs. ExPASy Swiss-Prot
Match: RING1_PANPA (E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.043e-20
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:  435 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 686
            + V    +  E+ CPICL +++ T T  ECLHRFC +CI  A+R GN ECP CR    S+RSLR D N+DALI+ +YP  ++YE
Sbjct:    6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 89
The following BLAST results are available for this feature:
BLAST of FC877923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RING2_RAT3.595e-2151.19E3 ubiquitin-protein ligase RING2 OS=Rattus norveg... [more]
RING2_PONAB3.595e-2151.19E3 ubiquitin-protein ligase RING2 OS=Pongo abelii ... [more]
RING2_MOUSE3.595e-2151.19E3 ubiquitin-protein ligase RING2 OS=Mus musculus ... [more]
RING2_HUMAN3.595e-2151.19E3 ubiquitin-protein ligase RING2 OS=Homo sapiens ... [more]
RNG2B_XENLA1.046e-2051.19E3 ubiquitin-protein ligase RING2-B OS=Xenopus lae... [more]
RNG2A_XENLA1.046e-2051.19E3 ubiquitin-protein ligase RING2-A OS=Xenopus lae... [more]
RING2_DANRE1.046e-2051.19E3 ubiquitin-protein ligase RING2 OS=Danio rerio G... [more]
RING1_RAT3.043e-2050.00E3 ubiquitin-protein ligase RING1 OS=Rattus norveg... [more]
RING1_PANTR3.043e-2050.00E3 ubiquitin-protein ligase RING1 OS=Pan troglodyt... [more]
RING1_PANPA3.043e-2050.00E3 ubiquitin-protein ligase RING1 OS=Pan paniscus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO11RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877923 ID=FC877923; Name=FC877923; organism=Citrus clementina; type=EST; length=765bp
CCTCTCTCTTCTCTCTCAATTTCTAACACTGAAAAAAAAAAAAAAAAAAA
AAAAGAAGAAAGAAATAAAGGTCAAGCAAGAGCAAGATATTCACCACCTT
CATTGATCTCTCTTGCCAACCCAAAGATCGCTTATTATTTTCTCTGTGTC
GTTGAATAAGAAACAAGAAAGTGGAAGCAATGCCAGCACAGAAGCGCTCT
TATGAGAACGCCACCACTAATAATAATAATAATAATCACATTATTATTAC
CCCGTCAGAGGTCGTTGAGGCTGTTCTCGATGATGATGGTGATGATACTC
TGCAACGCGACCACAGTAACAACCTTGAAGAGCAGCAGCCTCCTCAGGAT
TCTACTCCTGCTGCTGCTGCTGACGTGGACGGTAACGAATCTGATCGAAG
CCGTTCGTCCGGTGACGGAGAGAAAGACGAGTTTGTTATAGTAAAATTGT
CTGATATACGCAAGGAAGTACAGTGTCCAATCTGTTTGGGGATCATTCGC
AAAACAAGAACAGTGATGGAATGCCTGCATCGCTTCTGCAGGGAATGCAT
CGACAAAGCTATGAGGCTGGGGAACAATGAGTGTCCCGCCTGCCGCACAC
ATTGTGCTAGTCGCCGCTCTTTGAGAGATGATCTAAACTATGATGCCCTG
ATTGCAGCTTTATATCCAGATATTGACAAATATGAGGAAGAGGTATCATT
TAGCTTATTTAGTGCTTCTCAATTTAGAATCTGATCTCTTTTTTAATTGA
AATTCAAGCATTCAT
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