FC877924

Overview
NameFC877924
Unique NameFC877924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length817
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877924_ssr545 microsatellite FC877924_ssr545:545..554. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877924_ssr662 microsatellite FC877924_ssr662:662..673. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877924_ssr397 microsatellite FC877924_ssr397:397..408. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877924_ssr552 microsatellite FC877924_ssr552:552..563. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11349 contig Ccv1_Contig11349:7..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877924 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 2 
Query:   41 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDW 370
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDW 99
The following BLAST results are available for this feature:
BLAST of FC877924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.056e-2150.00Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA49BE11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877924 ID=FC877924; Name=FC877924; organism=Citrus clementina; type=EST; length=817bp
TAAAGATTTAGAAACTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGA
AGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGC
AGGCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGA
GGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGA
GTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCG
CGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGC
TACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACT
CTCCCACTGTTTATGACTGGTAAGTACGTGCGTGTGTCCTCACTCACTCG
CTCGCTCGCTCACTCGCTCTTCACTAGCATAGATGCTGCATGCTTGTTCT
AACTTATTATTCTTTCTTTAGACCCTTATCAGTTGAACGCAAAGGCAACT
TGTACTCTATCTATATATGTTTAATCATGTTCGGTTGCTGATAAATATAT
ATATTTATTTATTAATTTGTTCTCTTTTTCTCCCCCCCCCCCCCCTTTTT
TTAAAACTGAATTAATTCCCCGATCAGAAAAAAAACCGCAGCTTATTATA
TTCATGTGTGCGTGTGTGTGTGTTTTAAAAAGAAAAATGATGAAACCAAA
TCGATGGAGCATCAACTCAAACATCTCTGTTTTTGTTTTGTTTTTTTTGT
CGTTCCTACTGGCTTCTCTCAGCAACCAAATAAAGGCTAAGAGGAAGGAG
GAAAACGTGGCACTCTG
back to top