FC877925

Overview
NameFC877925
Unique NameFC877925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877925_ssr14 microsatellite FC877925_ssr14:14..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8917 contig Ccv1_Contig8917:213..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877925 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.819e-93
Identity = 164/234 (70.09%), Postives = 191/234 (81.62%), Query Frame = 3
Query:   51 LTDPNSNRNPIQSHLSFAFTHHYPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPFPL 752
            L+D +S +  + S+    FT    +  P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVV+IPNSMT+LDELLP  +
Sbjct:  349 LSDGSSEKKDVSSNTVQTFT----VVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISI 578          
BLAST of FC877925 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 9.067e-92
Identity = 157/204 (76.96%), Postives = 178/204 (87.25%), Query Frame = 3
Query:  141 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPFPL 752
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNIPNSMTILDELLP  +
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISI 575          
BLAST of FC877925 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.547e-91
Identity = 163/216 (75.46%), Postives = 183/216 (84.72%), Query Frame = 3
Query:  108 THHYPMGFPANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPFPL 752
            TH       +NG+    KP LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNIPNSMT+LDELLP  +
Sbjct:  367 THMVVPSQRSNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISI 580          
BLAST of FC877925 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.125e-32
Identity = 77/199 (38.69%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  165 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPN---VDWCESHK--VETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLP 743
            +K+LI+G  GWIG ++ K+ + Q         R ++ +++E +I+ +KP  V +  G T  P    +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS  K   + L+  F+N V  LR+RMPI+ +  NPR+FITKI  Y ++ +IPNSMTILD+++P
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSIPNSMTILDQMIP 197          
The following BLAST results are available for this feature:
BLAST of FC877925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM2_ARATH2.819e-9370.09Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM3_ARATH9.067e-9276.96Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH1.547e-9175.46Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
YL780_MIMIV2.125e-3238.69Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO12RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877925 ID=FC877925; Name=FC877925; organism=Citrus clementina; type=EST; length=790bp
TGAAAGCCACCCAACACACACACATAGATTCCAATCAATAGTACGAAATT
CTAACAGATCCAAATTCAAATCGAAATCCGATCCAGTCTCATCTCTCCTT
TGCATTCACTCACCATTACCCAATGGGTTTCCCAGCCAACGGCTCCGACG
CCGGCTCCAAGCCGCTCAAGTTTCTCATCTACGGCCGCACTGGCTGGATC
GGGGGCTTGCTCGGCAAGCTCTGCCAAGCTCAGTCCATTGACTTCACCTA
CGGCTCCGGCCGCCTCGAGAACCGCGCCTCCCTCGAAGCCGACATCGCCG
CCGTCAAGCCCACCCACGTCTTCAACGCGGCCGGGGTGACCGGTAGGCCT
AACGTCGACTGGTGCGAATCGCATAAGGTCGAGACCATACGGACTAATGT
CGTCGGCACCCTTACGCTTGCTGACGTCTGCAGAGACAAAGGTTTGATTC
TCATTAATTACGCCACCGGCTGCATCTTCGAGTACGATTCCGGTCACCCC
CTCGGATCCGGCATCGGCTTCAAGGAGGAGGATACTCCGAATTTTGTCGG
ATCTTTCTACTCCAAGACTAAGGCCATGGTGGAAGAGTTGCTCAAGAATT
TTGAGAATGTCTGTACTTTGCGTGTCAGGATGCCGATCTCATCAGATTTA
TCCAATCCTCGCAACTTCATCACAAAGATCACTCGATATGAAAAGGTAGT
CAACATTCCAAACTCAATGACTATCTTGGATGAGCTTCTTCCATTTCCAT
TGAGATGGCAAAGAGAAACCTCACTGGAATTTGGAACTTT
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