FC877926

Overview
NameFC877926
Unique NameFC877926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig262 contig Ccv1_Contig262:34..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL91_ARATH (60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3)

HSP 1 Score: 330.102 bits (845), Expect = 1.041e-89
Identity = 162/194 (83.51%), Postives = 181/194 (93.30%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 625
            MKTILSSETMDIPD V +K++AKVIEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKID+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG + K+IEIRNFLGEKKVRKV+MLDGVT++RS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKS I+ EE
Sbjct:    1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL9_PEA (60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.775e-89
Identity = 166/194 (85.57%), Postives = 181/194 (93.30%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 625
            MKTILSSETM+IPDGV +K+NAKVIEVEGPRGKL RDFKHLNLDF L+TD E GK+KLKIDAWFGSRKTSAAIRTALSHV NLITGVTKG+RYKMRFVYA FPINASI N+NK+IEIRNFLGEKKVRKVD+LDGV++IRS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  ++ EE
Sbjct:    1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITD-ENGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAVVVEE 193          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL92_ARATH (60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 9.739e-88
Identity = 159/194 (81.96%), Postives = 177/194 (91.24%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 625
            MKTILSSETMDIPDGV +K+NAKVIEVEGPRGKL+RDFKHLNLDF L+ D  TGKR+LKID+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI  NNK+IEIRNFLGEKKVRKV+MLDGV ++RS+KVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  I  EE
Sbjct:    1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL9_ORYSJ (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3)

HSP 1 Score: 311.612 bits (797), Expect = 3.830e-84
Identity = 155/190 (81.58%), Postives = 175/190 (92.11%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 613
            MKTIL+SETM+IP+GV V++ AKV+ VEGPRGKL+R+FKHLNLDF L+  G    RKL++DAWFG+R+T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N AIEIRNFLGEKKVRKVDML+GVT++RS+KVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVS+K TI
Sbjct:    1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGG----RKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTI 186          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.212e-57
Identity = 113/194 (58.25%), Postives = 139/194 (71.65%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 625
            MKTILS++T+DIPD V V +  + + V+GPRG L R+F H+NL+  L+   +   +KL++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +R+V M  GV    S   KDELVL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T++  E
Sbjct:    1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVEPE 191          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL9_MOUSE (60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 1.161e-56
Identity = 110/190 (57.89%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 613
            MKTILS++T+DIP+ V++ +  + + V+GPRG L RDF H+N++  L+      K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL9_MACFA (60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.517e-56
Identity = 111/190 (58.42%), Postives = 138/190 (72.63%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 613
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+      K++L++D W+G+RK  A IRT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.517e-56
Identity = 110/190 (57.89%), Postives = 138/190 (72.63%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 613
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+      K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL9_RAT (60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.981e-56
Identity = 110/190 (57.89%), Postives = 138/190 (72.63%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 613
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+      K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.981e-56
Identity = 110/190 (57.89%), Postives = 138/190 (72.63%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 613
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+      K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
The following BLAST results are available for this feature:
BLAST of FC877926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL91_ARATH1.041e-8983.5160S ribosomal protein L9-1 OS=Arabidopsis thaliana... [more]
RL9_PEA1.775e-8985.5760S ribosomal protein L9 OS=Pisum sativum GN=RPL9 ... [more]
RL92_ARATH9.739e-8881.9660S ribosomal protein L9-2 OS=Arabidopsis thaliana... [more]
RL9_ORYSJ3.830e-8481.5860S ribosomal protein L9 OS=Oryza sativa subsp. ja... [more]
RL9_ICTPU5.212e-5758.2560S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_MOUSE1.161e-5657.8960S ribosomal protein L9 OS=Mus musculus GN=Rpl9 P... [more]
RL9_MACFA1.517e-5658.4260S ribosomal protein L9 OS=Macaca fascicularis GN... [more]
RL9_BOVIN1.517e-5657.8960S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]
RL9_RAT1.981e-5657.8960S ribosomal protein L9 OS=Rattus norvegicus GN=R... [more]
RL9_HUMAN1.981e-5657.8960S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877926 ID=FC877926; Name=FC877926; organism=Citrus clementina; type=EST; length=892bp
CGTATGAGGAGAAGAAGAAGGAAGATATTACAGAGAGAGGAAAATGAAGA
CAATTCTCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAG
ATAAATGCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCG
CGACTTCAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGGGGAAA
CCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACC
AGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGG
TGTTACCAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTC
CCATCAACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAAC
TTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATGCTTGATGGTGTTAC
CGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATG
ACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCAT
GTGAAGAACAAGGACATTAGGAAATTTCTTGATGGGATCTATGTCAGTGA
GAAAAGCACCATACTTGGAGAAGAATGATGATTAGCTTTCGAATTTTCTT
GTCATAGTAATGTTATGAATTTTTTTTTAAATCTTTTTAATTTTGCCTCT
TACTTTGAGTTGAGGACATGCTTTTGGTTGTATTTGGGATTTGGGACTTG
GGAGTTCTAGATTTCAATTTTATGTCTTCAATTGCTATCATCACAATATA
TGTATGGATTTTATAGCTATGCATCTGGCATTTTTGATCTTTTATCTACC
TCTTGAATAATCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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