FC877928

Overview
NameFC877928
Unique NameFC877928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length935
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13693 contig Ccv1_Contig13693:22..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877928 vs. ExPASy Swiss-Prot
Match: DTL_MOUSE (Denticleless protein homolog OS=Mus musculus GN=Dtl PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.687e-35
Identity = 91/279 (32.62%), Postives = 133/279 (47.67%), Query Frame = 1
Query:  136 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHQENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA------------ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQACPHAESS---SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPI 927
            G   PP   +FC      HI AV++E+G+V L+++  +     C +E         W+AH NA+FDL W+  +  ++TA+GDQT K WD    +  G   GH  S+KS+        +  +G RDG+  IWD RC      N  + F      + GAH  +  +  S+ K             +  S+T VL+ +DE ++ +A AV+ I+K WD R       Q  P A  S       TR  G SSL  DS G  L A+C D  IY++N+  L   P+
Sbjct:   47 GVPVPPFGCTFCTAPSMEHILAVANEEGFVRLYNTESQTSKKTCFKE---------WMAHWNAVFDLAWVPGELKLVTAAGDQTAKFWDVRAGELMGTCKGHQCSLKSVAFPKFQKAVFSTGGRDGNIMIWDTRC------NKKDGFYRQVNQISGAHNTADKQTPSKPKKKQNSKGLAPAVDSQQSVTVVLF-QDENTLVSAGAVDGIIKVWDLRKNYTAYRQE-PIASKSFLYPGTSTRKLGYSSLVLDSTGSTLFANCTDDNIYMFNMTGLKTSPV 308          
BLAST of FC877928 vs. ExPASy Swiss-Prot
Match: DTL_CHICK (Denticleless protein homolog OS=Gallus gallus GN=DTL PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.741e-34
Identity = 93/279 (33.33%), Postives = 135/279 (48.39%), Query Frame = 1
Query:  136 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHQENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL--------SQSKRVSRRKAASM-----SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQACPHAES--SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPI 927
            G   PP   SF       H+ AV++E+G+V L+D+           +N  K    +W AH NA+FDL W+  +  I+TASGDQT K+WD    +  G   GH  S+KS+        +  +G RDG+  +WD RC      N  + F      + GAH +         + KR + R  A +     S+T VL L+DE ++ +A AV+ ++K WD R   A   Q    ++S       TR  G SSL  DS G  L A+C D  IY++N+  L   P+
Sbjct:   43 GMPVPPFGCSFSAAPNFEHVLAVANEEGFVRLYDTEA---------QNTTKLISKEWQAHSNAVFDLAWVPGEHRIVTASGDQTAKVWDVRAGELLGICKGHQCSLKSVAFSRFEKAVFCTGGRDGNIMVWDTRC------NKKDGFYRQVNQISGAHNVVDRQTPSKLRKKRQNLRGLAPLVDFQQSVTVVL-LQDEHTLISAGAVDGVIKVWDLRKNYAAYRQDPVPSKSFFYPGTSTRKLGYSSLVLDSTGANLFANCTDDSIYMFNMTSLKTFPV 305          
BLAST of FC877928 vs. ExPASy Swiss-Prot
Match: DTL_HUMAN (Denticleless protein homolog OS=Homo sapiens GN=DTL PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 5.067e-34
Identity = 88/279 (31.54%), Postives = 132/279 (47.31%), Query Frame = 1
Query:  136 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHQENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA------------SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQACPHAESS---SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPI 927
            G   PP   +F       H+ AV++E+G+V L+++           ++  K    +W+AH NA+FDL W+  +  ++TA+GDQT K WD +  +  G   GH  S+KS+        +  +G RDG+  +WD RC      N  + F      + GAH  S  +  S+ K                S+T VL+ +DE ++ +A AV+ I+K WD R       Q  P A  S       TR  G SSL  DS G  L A+C D  IY++N+  L   P+
Sbjct:   47 GVPVPPFGCTFSSAPNMEHVLAVANEEGFVRLYNTE---------SQSFRKKCFKEWMAHWNAVFDLAWVPGELKLVTAAGDQTAKFWDVKAGELIGTCKGHQCSLKSVAFSKFEKAVFCTGGRDGNIMVWDTRC------NKKDGFYRQVNQISGAHNTSDKQTPSKPKKKQNSKGLAPSVDFQQSVTVVLF-QDENTLVSAGAVDGIIKVWDLRKNYTAYRQE-PIASKSFLYPGSSTRKLGYSSLILDSTGSTLFANCTDDNIYMFNMTGLKTSPV 308          
BLAST of FC877928 vs. ExPASy Swiss-Prot
Match: DTL_XENTR (Denticleless protein homolog OS=Xenopus tropicalis GN=dtl PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.380e-31
Identity = 91/297 (30.64%), Postives = 143/297 (48.15%), Query Frame = 1
Query:   85 DVVTDFTEIGAVAVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHQENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH--LLSQS-KRVSRRKA----------ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQACPHAE--SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIT 930
            D  T + E+GA          PP   +F      SH+ AV++E+G V L+D+  +         + ++  + +++AH NA+FD+ W+  +  ++TASGDQT K+WD +     G   GH  S+KS+        +  +G RDG+  +WD RC      N  + F      + GAH  L  Q+  +V +RK           +  S+T V++ +DE +I +A AV+ IVK WD R   +   Q    A+        TR  G S+L  D  G  L ASC D  +Y++N   L   P++
Sbjct:   38 DEHTSYGELGAAV--------PPFGCAFSTVPDMSHVLAVANEEGIVRLYDTECR---------DVQRLVVKEFMAHTNAVFDIAWVPGEHKLVTASGDQTAKLWDVKAGDLIGECKGHQCSLKSVAFSKFEKAVFSTGGRDGNIMVWDTRC------NKKDGFYRQVNQITGAHNALDKQTPSKVKKRKPYVRGLAPSVDSQQSVTVVIF-QDEHTIISAGAVDGIVKVWDLRKNYSAYRQDPVPAKLFPYPGNSTRKLGYSNLVLDPTGTNLFASCTDDNVYMFNATGLKTEPVS 310          
BLAST of FC877928 vs. ExPASy Swiss-Prot
Match: L2DTL_DROME (Protein lethal(2)denticleless OS=Drosophila melanogaster GN=l(2)dtl PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.333e-25
Identity = 77/275 (28.00%), Postives = 129/275 (46.91%), Query Frame = 1
Query:  142 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHQENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK-----SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK-----AASMSITSVLYLKDEVSIATASAVNSIVKFWDTR-NLKAQITQACPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPI 927
            E P  +  F       HI A+++EDG ++L D+ ++           E+  +     H NA+FDL W       ++ASGD T ++W+       G  + +GHT S+KS     T+  +  +G RDG+  IWD+R       +S   NC    ++S         +SQ K+ +R         S SIT + + +D  ++ +  A + ++K WD R N  A   +  P  +   A  +   G ++L  D++G  L A+CMD+ IY YN+    + P+
Sbjct:   50 EPPIFSAKFANCDGYRHILAIANEDGKITLQDTTQR-------NHQPEEQSLVGPQCHFNAVFDLEWAPGQMRFVSASGDHTARLWEVAGSGIRGLNSYVGHTRSVKSAAFKRTDPAVFATGGRDGAILIWDIRANLNMDLTSRVDNC----IYSGHTGGPGTPVSQRKQRTRTPKMAGGTTSSSITGLAF-QDNDTLISCGAGDGVIKVWDLRRNYTAYKKEPLPRHKLPYAGSSTFRGFTNLIVDASGTRLYANCMDNTIYCYNLASYSQRPL 312          
BLAST of FC877928 vs. ExPASy Swiss-Prot
Match: CDT2_SCHPO (Cell division cycle protein cdt2 OS=Schizosaccharomyces pombe GN=cdt2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.648e-18
Identity = 76/260 (29.23%), Postives = 120/260 (46.15%), Query Frame = 1
Query:  178 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHQENAEKAR-ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC------TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR---RKAASMSITSVLYLKDEVS-IATASAVNSIVKFWDTRNL-KAQITQACPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG 921
            + N  + AV  E G + LFDSR        ++EN   AR I  W+AH NAIF + + K+D+ + T+SGDQT K++D   ++C       G    H+ S+K +     +   LVS SRDGS   WD+R                   + G H      R+ +         SITS  +L    S + ++ + NS +K WD R +   +   A    E +++K  R  G++++    +G  + A+  D  IY Y+   L+ G
Sbjct:  136 ANNESLLAVCTETGALELFDSRFYDRQ---NEENQPSARRIHGWLAHNNAIFSVNFSKDDSLLATSSGDQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDSPYNLVSCSRDGSIIFWDMRT--------------HGITIDGEHFQKPVLRIRKAHENSGRDCSITSATWLPQSTSQVISSCSANSALKLWDLRTVHTVRPLPAATTPELTTSK--RDFGVTNVCTSPDGERIYAASRDSIIYEYSSRHLNSG 376          
BLAST of FC877928 vs. ExPASy Swiss-Prot
Match: PFS2_EMENI (Polyadenylation factor subunit 2 OS=Emericella nidulans GN=pfs2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  310 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 537
            AH +A+ DL W   DT  L+AS D T+KI+D   + C   L GH   +KS   HPT   +LVSGS+D     WD R
Sbjct:  153 AHHDAVRDLAWSPSDTKFLSASDDTTLKIYDFTARTCDTVLTGHNWDVKSCDWHPTKG-LLVSGSKDHQVKFWDPR 227          
The following BLAST results are available for this feature:
BLAST of FC877928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DTL_MOUSE2.687e-3532.62Denticleless protein homolog OS=Mus musculus GN=Dt... [more]
DTL_CHICK1.741e-3433.33Denticleless protein homolog OS=Gallus gallus GN=D... [more]
DTL_HUMAN5.067e-3431.54Denticleless protein homolog OS=Homo sapiens GN=DT... [more]
DTL_XENTR1.380e-3130.64Denticleless protein homolog OS=Xenopus tropicalis... [more]
L2DTL_DROME7.333e-2528.00Protein lethal(2)denticleless OS=Drosophila melano... [more]
CDT2_SCHPO6.648e-1829.23Cell division cycle protein cdt2 OS=Schizosaccharo... [more]
PFS2_EMENI7.871e-1144.74Polyadenylation factor subunit 2 OS=Emericella nid... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100AD10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877928 ID=FC877928; Name=FC877928; organism=Citrus clementina; type=EST; length=935bp
ACCCCAAAATCAGAATCTTTCTTCCTAAATGTCAGATCAAGAGAGCTCAA
CGGTTTCAAAGCTCGGAAAAGACCGTATTTTGGTGACGTGGTAACGGATT
TCACGGAAATCGGAGCCGTGGCCGTCGAACACCATGGCGAGGAGACGCCG
CCATTGGCCGTTTCATTTTGCAAGACAAGTAAAAACTCCCATATATTTGC
CGTGTCGGACGAGGATGGTTATGTGAGCTTGTTTGATTCACGTAGAAAGC
TTCCTTCTTTTGCATGTCACCAGGAGAATGCAGAGAAAGCCAGAATAAGT
GACTGGGTTGCACATCAAAATGCTATTTTTGATTTGTGCTGGATCAAGGA
GGATACCAACATTTTAACAGCTTCAGGGGATCAAACTATAAAGATATGGG
ATGCAGAGAAAAAGAAATGTACTGGAGCATTGATGGGGCACACAGGGAGT
ATAAAATCATTGTGTTCTCATCCAACAAATTCTGATATTCTTGTTTCTGG
TTCAAGAGATGGGTCCTTTGCTATATGGGACTTGAGATGCAAGTCCAGTC
CCAAAAGTAATTGTGCAGAATCTTTTGTATTCTCATCTGCTGTAGTCAAA
GGAGCTCATCTTTTGTCTCAATCAAAAAGAGTTAGCCGCAGGAAGGCTGC
TTCCATGAGCATTACATCAGTTCTTTATCTGAAAGATGAAGTGTCCATTG
CTACCGCTAGTGCAGTGAACAGCATTGTAAAGTTCTGGGATACCAGGAAT
CTTAAGGCTCAAATTACTCAGGCTTGCCCTCATGCAGAGTCATCATCCGC
AAAGGAAACAAGATTACATGGTATTTCTAGCCTGTCTCAGGATTCTAATG
GGGTGTTTCTTACAGCTTCATGCATGGACCATAGAATATACCTGTACAAT
GTACTTCAGCTTGATAAAGGGCCAATTACACATTT
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