FC877935

Overview
NameFC877935
Unique NameFC877935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length954
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877935_ssr259 microsatellite FC877935_ssr259:259..273. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11345 contig Ccv1_Contig11345:179..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877935 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 8.913e-50
Identity = 109/189 (57.67%), Postives = 131/189 (69.31%), Query Frame = 1
Query:  343 VVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNR--GVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKES-----SGASPWDSSQDGIQDG--TPRPETVVRRCQHCGVSENNTPAMRRGPAGLRTLCNACGLMWANKG 882
            VV        +LTLSF+G+VYVF  V+PEKVQAVLLLLGGR++P  +PT      Q+NR  G+  TP+R ++ +R+ASL+RFREKRK R FDK IRY+VRKEVA RM RK GQF S K S     S  S W S+Q    +G  T +PE +   C+HCG SE +TP MRRGP G RTLCNACGLMWANKG
Sbjct:   69 VVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVL---CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKG 254          
BLAST of FC877935 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 8.342e-48
Identity = 104/188 (55.32%), Postives = 129/188 (68.62%), Query Frame = 1
Query:  343 VVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNR--GVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKE-----SSGASPWDSSQD-GIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGLRTLCNACGLMWANKG 882
            VV   + +  +LTLSF+G+VYVF +V PEKVQAVLLLLGGR++P   P       Q+NR   +  TP+R ++ +R+ASLVRFREKRK R FDKKIRY+VRKEVA RM R  GQF S K      +S  S W S+Q   I+    + + +   C+HCG+ E +TP MRRGPAG RTLCNACGLMWANKG
Sbjct:   73 VVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEI--SCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKG 258          
BLAST of FC877935 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.874e-40
Identity = 89/172 (51.74%), Postives = 112/172 (65.12%), Query Frame = 1
Query:  370 SELTLSFEGEVYVFPAVTPEKVQAVLLLLGGR-DIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGLRTLCNACGLMWANKG 882
            ++LT+SF G+VYVF AV  +KV AVL LLGG  ++  G   +E+   Q++  VV+   R +L +R  SL RFR+KR  RCF+KK+RY VR+EVA RM R  GQF S K + GA    + QD  QD    PE     C HCG+S   TP MRRGP+G RTLCNACGL WAN+G
Sbjct:   82 NQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNSGTDQDSAQDDA-HPEI---SCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRG 249          
The following BLAST results are available for this feature:
BLAST of FC877935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT27_ARATH8.913e-5057.67GATA transcription factor 27 OS=Arabidopsis thalia... [more]
GAT25_ARATH8.342e-4855.32GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT26_ARATH2.874e-4051.74GATA transcription factor 26 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA22DG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877935 ID=FC877935; Name=FC877935; organism=Citrus clementina; type=EST; length=954bp
TTTTTAAACCTTCTTATCTCGCCCCAGAACACGAAAATGATGACCTCGCT
TCAATAAAACGACAGGTAATCATAATACTCGACTGAGAAACCAGAGTCTG
TTATGGCGGCGGCAAATCCACAGCCACTGCAAGCTCGGCCGTTTGAAGAA
CACGCGCGAGCTCCACCGATACAGATCGAGGACGAGGATGGAGATTACGA
GGACGGCGAGGGCATGGATGACATAGACGAAGGAAACATTAATTCAATTA
ATATTATAAACAACAACAACAACAATAATAATACTAATAACAATAGTAAT
ATTAGTAATAATAGTTCGATGGTTAACGTGGCGGAGCATGGAGTAGTGGT
GGCGGCAGCTTCGAGGACAAGTGAGCTCACGCTCTCCTTTGAAGGCGAGG
TTTATGTGTTCCCTGCTGTTACTCCTGAAAAGGTGCAAGCTGTGCTCTTG
CTTTTGGGAGGACGTGATATACCTACTGGTGTACCTACAATCGAAGTGCC
TTATGATCAGAGTAACAGGGGTGTGGTTGACACCCCCAAGCGCTCAAATC
TTTCTCGAAGAATAGCCTCCCTTGTTAGGTTTAGAGAAAAACGGAAGGAG
AGATGTTTTGACAAGAAAATTAGGTACAGCGTACGGAAAGAGGTTGCACA
GAGGATGCATCGTAAGAACGGGCAGTTTGCATCTTTGAAAGAGAGTTCTG
GTGCTTCACCTTGGGATTCTTCACAAGATGGGATTCAAGATGGCACTCCT
CGTCCAGAAACTGTTGTCCGTAGATGTCAACATTGTGGCGTTAGTGAAAA
TAATACTCCTGCAATGCGTCGTGGGCCAGCTGGACTAAGAACTTTATGTA
ATGCATGTGGCCTTATGTGGGCAAATAAAGGACACTGAGGAATCTCAGTA
AGGGGGGAAAGAGTCTTTTCATGGACCAATTAGAACTGAAACTCCAATGG
ATGT
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