FC877938

Overview
NameFC877938
Unique NameFC877938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length806
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11531 contig Ccv1_Contig11531:118..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL6_MOUSE (Oxysterol-binding protein-related protein 6 OS=Mus musculus GN=Osbpl6 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.253e-35
Identity = 78/185 (42.16%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  238 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTN 783
            N W +++  IG D+ S V++PV ++EP + LQ + E MEYS LLD A E +DPY R+V  +++A+S Y +  +R   KPFNPVLGET+E +    G  F +EQVSHHPP+SA H E+++F++    + + KF G S+++ PVG   VTL + G         T +HN++ GR WI+  G++ + N
Sbjct:  595 NLWNILRNNIGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYCSTYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCESKNFVFWQDIRWKNKFWGKSMEILPVGTLNVTLPKYGDYYVWNKVTTCIHNILSGRRWIEHYGEVTLRN 778          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL3_HUMAN (Oxysterol-binding protein-related protein 3 OS=Homo sapiens GN=OSBPL3 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.645e-35
Identity = 77/184 (41.85%), Postives = 118/184 (64.13%), Query Frame = 1
Query:  244 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNL 786
            W +++  IG D+ S V +PV ++EP + LQR+ E +EYS LLD A +   P  R+VY +++A+S Y +  YR   KPFNPVLGET+E +    G  F +EQVSHHPP+SA HAE+ +F++    + + KF G S+++ P+G T VTL   G   +     + +HN++ G+ WI+  G++V+ NL
Sbjct:  529 WNILRNNIGKDL-SKVAMPVELNEPLNTLQRLCEELEYSELLDKAAQIPSPLERMVYVAAFAISAYASSYYRAGSKPFNPVLGETYECIREDKGFQFFSEQVSHHPPISACHAESRNFVFWQDVRWKNKFWGKSMEIVPIGTTHVTLPVFGDHFEWNKVTSCIHNILSGQRWIEHYGEIVIKNL 711          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL6_HUMAN (Oxysterol-binding protein-related protein 6 OS=Homo sapiens GN=OSBPL6 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.120e-35
Identity = 77/185 (41.62%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  238 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTN 783
            N W +++  IG D+ S V++PV ++EP + LQ + E MEYS LLD A E +DPY R+V  +++A+S Y +  +R   KPFNPVLGET+E +    G  F +EQVSHHPP+SA H E+++F++    + + KF G S+++ PVG   V L + G         T +HN++ GR WI+  G++ + N
Sbjct:  570 NLWNILRNNIGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYCSTYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCESKNFVFWQDIRWKNKFWGKSMEILPVGTLNVMLPKYGDYYVWNKVTTCIHNILSGRRWIEHYGEVTIRN 753          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL7_HUMAN (Oxysterol-binding protein-related protein 7 OS=Homo sapiens GN=OSBPL7 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.809e-34
Identity = 78/183 (42.62%), Postives = 118/183 (64.48%), Query Frame = 1
Query:  244 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTN 783
            W +++  IG D+ S V++PV ++EP + LQR+ E +EYS LLD A    DP  R+VY +++A+S Y +  +R   KPFNPVLGET+E      G  FI+EQVSHHPP+SA HAE+E+F +    K + KF G S+++ PVG   V+L R G   +     + +HN++ G+ WI+  G++++ N
Sbjct:  480 WNILRNNIGKDL-SKVSMPVQLNEPLNTLQRLCEELEYSSLLDQASRIADPCERMVYIAAFAVSAYSSTYHRAGCKPFNPVLGETYECERPDRGFRFISEQVSHHPPISACHAESENFAFWQDMKWKNKFWGKSLEIVPVGTVNVSLPRFGDHFEWNKVTSCIHNVLSGQRWIEHYGEVLIRN 661          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSB11_DICDI (Oxysterol-binding protein 11 OS=Dictyostelium discoideum GN=osbK PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.363e-34
Identity = 73/193 (37.82%), Postives = 112/193 (58.03%), Query Frame = 1
Query:  226 EERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK 801
            E++ + WK +   +G D  SLV+LPV+  EP +VL+   E + +  L++ A  C D   RL+Y +++ ++++ +Y R  KPFNP+LGETFE ++  G      EQVSHHPP+      +E F     S + TKF GNS+DV+  G+  + L   G       P    HN+IFG+ WI+  GD+++ N  TG+K
Sbjct:   88 EDKKSLWKKVGGLVGKDPMSLVSLPVYFFEPLTVLECQLEPLRFVELIEKASTCSDSIDRLMYLTAFNIAVFSSYTRTAKPFNPLLGETFEYIDKQGRYKSFCEQVSHHPPIGIAQTTSEIFDLQQESWITTKFWGNSLDVFSHGQNHLYLNSTGEHFTWKVPSAICHNIIFGKMWIEHYGDLIVENHNTGEK 280          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL3_MOUSE (Oxysterol-binding protein-related protein 3 OS=Mus musculus GN=Osbpl3 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.086e-34
Identity = 76/184 (41.30%), Postives = 116/184 (63.04%), Query Frame = 1
Query:  244 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNL 786
            W +++  IG D+ S V +PV ++EP + LQR+ E +EYS LLD A     P  R+VY +++A+S Y +  +R   KPFNPVLGET+E +    G  F AEQVSHHPP+SA HAE+ +F++    + + KF G S+++ P+G T VTL   G   +     + +HN++ G+ WI+  G++ + NL
Sbjct:  497 WSILRNNIGKDL-SKVAMPVELNEPLNTLQRLCEELEYSELLDKASRIPSPLERMVYVAAFAISAYASSYFRAGSKPFNPVLGETYECIRQDKGFQFFAEQVSHHPPISACHAESGNFVFWQDVRWKNKFWGKSMEIVPIGTTHVTLPAFGDHFEWNKVTSCIHNILSGQRWIEHYGEIDIKNL 679          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSB8_DICDI (Oxysterol-binding protein 8 OS=Dictyostelium discoideum GN=osbH PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.874e-34
Identity = 84/226 (37.17%), Postives = 127/226 (56.19%), Query Frame = 1
Query:  130 NGLLGY-EGLEVVNPEGSTEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK 801
            +G L Y +GL   N     E++ D   +G  + E+R    K +  Y+G D+ SL++LPV+I EP S LQ M+E ++Y+ LL  A + +  ++ L Y +++  ++Y    R  KPFNP+LGETFE+V+  G   F+AEQVSHHPP+      +E +   + + L++KF GNS +V   G      K+           T  HN+I G  W+D  GD+V+ N TTG K
Sbjct:    3 SGALNYMKGLVGTNENLQVEESGDN--KGDIEPEQRKGLLKQLSSYVGKDITSLISLPVWIFEPVSFLQVMSEPLQYNALLSKASKQDSEFLCLAYLAAFNCALYSTAVRTRKPFNPILGETFEIVDKKGEFRFLAEQVSHHPPIGVSETISEDYTLQLETLLKSKFYGNSSEVEIDGTNHFFNKKTNHHYTWNHLVTCCHNIIIGSLWLDHYGDLVIENHTTGSK 226          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL1_HUMAN (Oxysterol-binding protein-related protein 1 OS=Homo sapiens GN=OSBPL1A PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.447e-31
Identity = 75/190 (39.47%), Postives = 112/190 (58.95%), Query Frame = 1
Query:  244 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK 801
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+  +   + KF G S++  P G   + L           P   VHN+I G+ WI+  G++ + N  TGDK
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDK 738          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL1_RAT (Oxysterol-binding protein-related protein 1 OS=Rattus norvegicus GN=Osbpl1a PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.113e-31
Identity = 75/190 (39.47%), Postives = 112/190 (58.95%), Query Frame = 1
Query:  244 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK 801
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+  +   + KF G S++  P G   + L           P   VHN+I G+ WI+  G++ + N  TGDK
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSFSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDK 738          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL1_MOUSE (Oxysterol-binding protein-related protein 1 OS=Mus musculus GN=Osbpl1a PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 9.290e-31
Identity = 75/190 (39.47%), Postives = 112/190 (58.95%), Query Frame = 1
Query:  244 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK 801
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+  +   + KF G S++  P G   + L           P   VHN+I G+ WI+  G++ + N  TGDK
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLDHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDK 738          
The following BLAST results are available for this feature:
BLAST of FC877938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
OSBL6_MOUSE1.253e-3542.16Oxysterol-binding protein-related protein 6 OS=Mus... [more]
OSBL3_HUMAN3.645e-3541.85Oxysterol-binding protein-related protein 3 OS=Hom... [more]
OSBL6_HUMAN8.120e-3541.62Oxysterol-binding protein-related protein 6 OS=Hom... [more]
OSBL7_HUMAN1.809e-3442.62Oxysterol-binding protein-related protein 7 OS=Hom... [more]
OSB11_DICDI2.363e-3437.82Oxysterol-binding protein 11 OS=Dictyostelium disc... [more]
OSBL3_MOUSE3.086e-3441.30Oxysterol-binding protein-related protein 3 OS=Mus... [more]
OSB8_DICDI6.874e-3437.17Oxysterol-binding protein 8 OS=Dictyostelium disco... [more]
OSBL1_HUMAN5.447e-3139.47Oxysterol-binding protein-related protein 1 OS=Hom... [more]
OSBL1_RAT7.113e-3139.47Oxysterol-binding protein-related protein 1 OS=Rat... [more]
OSBL1_MOUSE9.290e-3139.47Oxysterol-binding protein-related protein 1 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA5AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA5AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877938 ID=FC877938; Name=FC877938; organism=Citrus clementina; type=EST; length=806bp
CTGCGAGTATTTTCTCCTGAGATTGTTAATTGAGACATGGCTTCCGATGG
ATCTAAGCAAGGCGGCGGTTTCTTCGCCTCCATCGCCGCCGGTTGGTCGA
CTATCGGCTCCGCCATGAGTAAATCGGTCAACGGTTTATTGGGCTATGAA
GGGCTGGAAGTTGTTAATCCTGAAGGGAGCACGGAAGATGCTGAAGATGA
AGCAAGAAGAGGAAGATGGAAACAGGAGGAAAGGGACAATTACTGGAAGA
TGATGCAAAAGTATATAGGTGCTGATGTTCAATCGTTGGTGACTCTTCCT
GTATTTATTTCAGAGCCAAATTCAGTGCTGCAGAGAATGGCAGAGTTGAT
GGAGTACTCCCACCTTCTGGATCTGGCAGATGAATGCGAGGATCCATACA
TGAGATTGGTATATGCTTCATCATGGGCTTTATCAATCTACTTTGCCTAT
CGACGGGCCTGGAAGCCATTTAATCCAGTTCTTGGTGAAACTTTTGAAAT
GGTTAATCATGGTGGTGTTACATTTATAGCTGAACAAGTTAGTCATCACC
CCCCAATGAGTGCTGGTCATGCCGAAAATGAGCACTTCATTTATGATGTG
ACTTCAAAGTTGAGAACAAAATTTTTAGGAAACTCGATTGATGTTTATCC
AGTTGGAAGGACACGTGTGACACTTAAAAGAGATGGGGTGGTTCTCGATT
TGGTGCCCCCTCCCACAAAGGTTCACAATTTAATTTTTGGACGAACTTGG
ATTGATTCACCGGGGGATATGGTCATGACTAACTTGACCACGGGCGACAA
AGTTGT
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