FC877940

Overview
NameFC877940
Unique NameFC877940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4247 contig Ccv1_Contig4247:15..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877940 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 3.835e-45
Identity = 85/120 (70.83%), Postives = 101/120 (84.17%), Query Frame = 3
Query:  354 VPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 713
            V + FP+GLRVLVVDDD TCL ILE+MLR CLY VT C++A +AL++LR+ K  FD+V+SDVHMPDMDGFKLLEH+GLEMDLPVIMMSAD   S V++G+ HGA DYLIKP+R E LKNI
Sbjct:   29 VVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNI 148          

HSP 2 Score: 26.1794 bits (56), Expect = 3.835e-45
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  700 SLKIYWQHVVRKRWNE 747
            +LK  WQHVVRKR +E
Sbjct:  144 ALKNIWQHVVRKRRSE 159          
BLAST of FC877940 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.449e-44
Identity = 86/125 (68.80%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  339 AADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 713
            AA  +  D FPA LRVLVVDDD TCL ILE+ML  CLY VT C++A  AL++LR+ K  FD+V+SDVHMPDMDGFKLLEH+GLEMDLPVIMMSAD   S V++G+ HGA DYLIKP+R E LKNI
Sbjct:   15 AAGGSNSDPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNI 139          

HSP 2 Score: 26.9498 bits (58), Expect = 2.449e-44
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  700 SLKIYWQHVVRKRWNE 747
            +LK  WQHVVRK+ NE
Sbjct:  135 ALKNIWQHVVRKKRNE 150          
BLAST of FC877940 vs. ExPASy Swiss-Prot
Match: ARR14_ARATH (Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 5.452e-44
Identity = 88/121 (72.73%), Postives = 100/121 (82.64%), Query Frame = 3
Query:  354 VPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 713
            + DQFP+GLR+LVVDDD +CL ILE+ML R +Y VT CSQA VAL ILRERK  FD+VLSDVHMP M+G+ LL+ +G LEMDLPVIMMS DGR + VM GI HGACDYLIKPIR EELKNI
Sbjct:    3 INDQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNI 123          

HSP 2 Score: 23.483 bits (49), Expect = 5.452e-44
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  703 LKIYWQHVVRKRWNENKE 756
            LK  WQHVVR++    KE
Sbjct:  120 LKNIWQHVVRRKCVMKKE 137          
BLAST of FC877940 vs. ExPASy Swiss-Prot
Match: ARR12_ARATH (Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.695e-42
Identity = 81/118 (68.64%), Postives = 95/118 (80.51%), Query Frame = 3
Query:  360 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 713
            DQFP G+RVL VDDD TCL+ILE +LR C Y+VTT +QA  AL +LRE K  FD+V+SDV MPDMDGFKLLE +GLEMDLPVIM+SA      VM+G+ HGACDYL+KP+R EELKNI
Sbjct:   11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNI 128          

HSP 2 Score: 26.9498 bits (58), Expect = 1.695e-42
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  703 LKIYWQHVVRKRWNENK 753
            LK  WQHVVR R+++N+
Sbjct:  125 LKNIWQHVVRSRFDKNR 141          
BLAST of FC877940 vs. ExPASy Swiss-Prot
Match: ARR10_ARATH (Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.210e-42
Identity = 82/123 (66.67%), Postives = 100/123 (81.30%), Query Frame = 3
Query:  345 DVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 713
            ++ V DQFP G+RVL VDDD TCLRIL+ +L+RC Y+VTT +QA  AL +LRE K  FD+V+SDV MPDMDGFKLLE +GLEMDLPVIM+SA      VM+G++HGACDYL+KP+R EELKNI
Sbjct:    6 EIEVLDQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNI 128          

HSP 2 Score: 22.7126 bits (47), Expect = 2.210e-42
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  703 LKIYWQHVVRK 735
            LK  WQHVVRK
Sbjct:  125 LKNIWQHVVRK 135          
BLAST of FC877940 vs. ExPASy Swiss-Prot
Match: ARR11_ARATH (Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.212e-42
Identity = 82/125 (65.60%), Postives = 101/125 (80.80%), Query Frame = 3
Query:  369 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNILAACCSEKVE 743
            P GLRVLVVDDD T L+ILE+ML++C Y VTTC  A  AL +LRERK  +D+V+SDV+MPDMDGFKLLEH+GLE+DLPVIMMS DG  S VM+G++HGACDYL+KPIR +ELK I      +K++
Sbjct:    8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRKKLQ 132          
BLAST of FC877940 vs. ExPASy Swiss-Prot
Match: ARR18_ARATH (Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.255e-34
Identity = 73/118 (61.86%), Postives = 91/118 (77.12%), Query Frame = 3
Query:  360 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 713
            D+FP G+RVL VDD+ TCLR LE++L RC Y+VT   ++  AL +LRE    FD+V+SDV MPD DGFKLLE IGLEMDLPVIM+SA     +VM+GI HGACDYL+KP+  +EL+NI
Sbjct:   12 DKFPVGMRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDVEMPDTDGFKLLE-IGLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNI 128          
BLAST of FC877940 vs. ExPASy Swiss-Prot
Match: APRR4_ARATH (Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 3
Query:  366 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 707
            FP GLRVLV D+D + L ILE+ L++  Y VT C++   A++ LR  +  FD+ +  V+  + D F+ L  IG EMDLP+I++S D  V +V + + +GA DYLIKPIR E+L+
Sbjct:   38 FPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLR 151          
BLAST of FC877940 vs. ExPASy Swiss-Prot
Match: ARR19_ARATH (Putative two-component response regulator ARR19 OS=Arabidopsis thaliana GN=ARR19 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.520e-20
Identity = 47/117 (40.17%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  363 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 713
            QFP    VLVVD + T L  ++Q++++  Y V+  + A  AL  L   K   ++V+ D HMP +DG + L+ I  ++DLPV++MS D +  +VM+   +GACDY++KP++EE + NI
Sbjct:   29 QFPGNTNVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFLTSCKHEINIVIWDFHMPGIDGLQALKSITSKLDLPVVIMSDDNQTESVMKATFYGACDYVVKPVKEEVMANI 145          

HSP 2 Score: 22.3274 bits (46), Expect = 6.520e-20
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 1
Query:  715 WQHVVRKR 738
            WQH+VRKR
Sbjct:  146 WQHIVRKR 153          
BLAST of FC877940 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSJ (Two-component response regulator EHD1 OS=Oryza sativa subsp. japonica GN=EHD1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.540e-19
Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  366 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 713
            +P GLRVLV+DDD + L ++E +L +C Y VTT      A+  + +     D+V+SD   P  DG  +L+ +  +  +P ++M++ G  + VM+ + +GA D+L+KP+R EEL NI
Sbjct:    7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNI 122          
The following BLAST results are available for this feature:
BLAST of FC877940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ARR1_ARATH3.835e-4570.83Two-component response regulator ARR1 OS=Arabidops... [more]
ARR2_ARATH2.449e-4468.80Two-component response regulator ARR2 OS=Arabidops... [more]
ARR14_ARATH5.452e-4472.73Two-component response regulator ARR14 OS=Arabidop... [more]
ARR12_ARATH1.695e-4268.64Two-component response regulator ARR12 OS=Arabidop... [more]
ARR10_ARATH2.210e-4266.67Two-component response regulator ARR10 OS=Arabidop... [more]
ARR11_ARATH6.212e-4265.60Two-component response regulator ARR11 OS=Arabidop... [more]
ARR18_ARATH1.255e-3461.86Two-component response regulator ARR18 OS=Arabidop... [more]
APRR4_ARATH4.628e-2145.61Putative two-component response regulator-like APR... [more]
ARR19_ARATH6.520e-2040.17Putative two-component response regulator ARR19 OS... [more]
EHD1_ORYSJ2.540e-1937.93Two-component response regulator EHD1 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA44BD04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877940 ID=FC877940; Name=FC877940; organism=Citrus clementina; type=EST; length=758bp
CAAACTCAATAATTCAACTCTTAGTTAAAAAAATCACTACACTCGAAATT
CCCTACAATTTAGCAACGAAAGCCAGCAATTCACTCACTTGGCTAACAAA
TTCGATCCCTGAAAGTCTCCAAATTATCTTCAAATTTCCCCATTTTATCC
CGAACTTTAGGGTTTTCTGTTCACTAGATCTAACTTCAACTCATTTCTGC
TCAATTGCAACATTCGGTCATCAAAAATGCTGAATTTCAGCTGCTTCCAG
TGAGATTAGCTGTTGCCGTTGCTGAAAAATGGCTGCTTTGCAGAGAATAG
TGCAGTCCTCGGGCGGCAGTGGCTACGGGTCTAGCAGGGCAGCTGACGTG
GCAGTACCTGATCAGTTTCCTGCTGGACTAAGGGTTCTTGTTGTTGACGA
TGACATTACTTGTCTGCGAATTCTCGAGCAGATGCTTCGTCGATGCCTCT
ACAACGTAACTACATGCTCCCAGGCAGCTGTTGCTTTGAATATTCTACGG
GAGAGGAAGGGCTGTTTTGATGTGGTGTTAAGTGACGTTCACATGCCTGA
TATGGATGGCTTCAAACTTCTTGAACATATTGGACTTGAAATGGATCTTC
CTGTTATCATGATGTCAGCTGATGGAAGAGTATCTGCTGTTATGAGGGGA
ATTAGACATGGAGCTTGTGATTACTTGATTAAGCCTATACGTGAAGAGGA
GCTTAAAAATATATTGGCAGCATGTTGTTCGGAAAAGGTGGAATGAAAAT
AAAGAACA
back to top