FC877941

Overview
NameFC877941
Unique NameFC877941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length907
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3400 contig Ccv1_Contig3400:254..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC877941 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.867e-26
Identity = 76/121 (62.81%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:  565 LRRRWRDVLPLRIRDFATRSRSGRNRILDWAEIL----NNSIEFRLEAPESDRYIGNPADYMD-AAGYEALLQNLAESD----GGRRGAPRAAKSAVLELPTVEILSE--QETIVCAICKD 894
            LRRR R   PL      T+SR+GRNRILDWAEIL    +NSIEFR+E   SDRY GNPADY+D AAGYEALLQNLAE D    GGRRGAP AAKSA+  L T E+ S   +  +VCA+CKD
Sbjct:  151 LRRRNR--FPLT----TTQSRTGRNRILDWAEILMGIEDNSIEFRME---SDRYAGNPADYIDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKD 262

HSP 2 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 41/101 (40.59%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:   97 YWCHHCEKRVSIETLANLPDVICHECKNGFVESIXXXXXXXXXXXXXXXD----HVDDPSFGSQFLQVLRLIAQAARDEDAPQQLTQDPQYGHDFLRIELD 387
            +WC+HC KRV +ETL +   V+C EC  GFVESI                    +V+D S GS FLQ+LRL+A A      P+ L     Y  DF R+EL+
Sbjct:   15 HWCYHCNKRVVVETLDDF--VVCCECNKGFVESIQPTPAAYSSPAPPQPLSPDLNVEDSSIGSHFLQMLRLLAHAPSQRSPPRHL-DVLSYEDDFFRLELN 112
The following BLAST results are available for this feature:
BLAST of FC877941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CIP8_ARATH2.867e-2662.81E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA78AH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877941 ID=FC877941; Name=FC877941; organism=Citrus clementina; type=EST; length=907bp
CACCGTGCAATCCGTAACTGCAGCTTGATGGCCGAATCTCCATCTCAGGC
ACCGACACCGACAACACCTACTGCGTCGGATACTGACCCGACGCAATATT
GGTGCCATCACTGTGAGAAACGTGTGTCAATCGAAACCCTTGCCAATCTC
CCCGATGTTATTTGTCATGAATGTAAGAACGGCTTTGTCGAATCAATCCC
CGTAACGTTAACCCCACCCTTTTCCCCACCTTCATTGACCCCTGATCACG
TCGATGACCCCTCCTTCGGATCCCAGTTCCTTCAGGTCCTGCGTTTAATA
GCGCAAGCCGCGCGTGATGAGGACGCGCCCCAGCAGCTTACCCAGGATCC
CCAGTATGGACATGATTTTCTTCGAATTGAGCTCGATGGATGGGAGAACG
ATGCGCGTGAGGATGAAAATGATGAAAACGAAGAGAACCGAAACGTTGAC
GAAGAAGGGGACGAAAATGAAAACGAAAACGAAGACGACGAAGAGAATGA
AGGAGGAGAAGATCGATCTGATAACGAGAACGAAGAGAATATAGAAAATG
AAGACGAAGAAGATCTGAGACGGAGGTGGCGGGATGTGCTCCCCCTACGG
ATCCGAGACTTCGCGACCCGATCGAGATCCGGTCGTAATCGGATCCTGGA
CTGGGCCGAGATTCTGAACAACTCGATAGAATTTCGACTTGAAGCTCCGG
AATCCGACCGGTACATAGGCAATCCTGCGGATTACATGGACGCAGCTGGA
TACGAGGCGTTGTTGCAGAACTTAGCTGAAAGTGACGGTGGTAGGAGAGG
GGCCCCGCGCGCGGCGAAATCTGCTGTGTTAGAGCTACCAACGGTGGAGA
TTTTGTCTGAGCAGGAGACTATTGTATGTGCTATATGTAAGGATATGGTC
AATGTTG
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