FC877944

Overview
NameFC877944
Unique NameFC877944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length900
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877944_ssr515 microsatellite FC877944_ssr515:515..526. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15328 contig Ccv1_Contig15328:25..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877944 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.040e-12
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = 2 
Query:   89 MATEDPVVDTETLPQPESPEPV------VEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 355
            MATE+P+V  ET+P+P   EP       V +K   KA   KT K+                    YEEMIKDAIV+LKEK GSSQYAIAKFIEEK
Sbjct:    1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKT-KKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEK 94
[Close]
BLAST of FC877944 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = 2 
Query:   89 MATEDPVVDTETLPQPESPEPVVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 355
            MATE+PV+  E + +  +PE  V+D+ +  A  GK  KE                    Y EMIKDAIVTLKE+TGSSQ+AI KFIEEK
Sbjct:    1 MATEEPVIVNEVVEEQAAPE-TVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEK 88
The following BLAST results are available for this feature:
BLAST of FC877944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
H1_PEA1.040e-1249.47Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_SOLLC3.027e-1247.19Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionIC0AAA44BD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877944 ID=FC877944; Name=FC877944; organism=Citrus clementina; type=EST; length=900bp
CCACCACCCGCATTTTTAGATCCAATCTTTCATTATCTTTCTTGCTCGCT
CTCCACTTCCTAATTTCTGAAACCCAATTCGATTCAAAATGGCCACTGAA
GATCCCGTTGTAGATACGGAGACCCTTCCCCAACCGGAATCCCCTGAACC
GGTGGTAGAGGACAAACCGTCCTCCAAAGCCGGCAAAGGCAAGACCTCTA
AGGAGCCCAAAGCCAAGAAAGCCGCTGCTCCGAGGAAGCCTAGAAGCCCT
CCCTCTCATCCTCCTTATGAAGAGATGATTAAGGATGCAATTGTTACTTT
GAAAGAGAAGACGGGTTCGAGTCAGTATGCAATTGCCAAGTTTATTGAGG
AGAAGCACAAGCAGTTGCCACCCAACTTTAAGAAGCTGTTGCTGTTTCAT
TTGAAGAAGCTTGTGGGTTCTGGAAAGCTCGTGAAGGTTAAGGGTTCCTT
CAAGCTTCCATCTGCTAGGGCTGCCGTTTCTAAGCCGGCTGCATCTGTTC
CTGCTTCTCCGGCTAAGAAGAAGAAGCCGGTTGCTGCTGGTAAGGCCAAA
ACTAAGGCGGTGCCCTCCAAGGCCAAAGCCCCACCTAAGGCTAAGGCCAA
GGCACCAGCTAAAGCTCCCGCCAAGGCTAAGCCAGCTGCTAAACCCAAAG
CCAAGCCGGCTGCCAAGACTAAGGCGGTGGCTGCCAAGACTAAAGCGGCT
CCGGCTAAGGCTAAGCCTGCTGCCAAACCGAAAGCTGCAACAACCAAGAC
GAAGGTGACCGCCAAGCCGAAGCCAAAGGAGAAGCCCGCCAAGGTTGCGA
GGACGTCGACCAGGACATCTCCAGGGAAAAGGGCAGCTGCTCCCAAGCCG
GCTCAAAAGAAGGCTCCAGCTGCCAAGAAAGCTCCGGCTAAAAGCGTGAA
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