FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7224 contig Ccv1_Contig7224:1..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: ACBC_ACTS5 (2-epi-5-epi-valiolone synthase OS=Actinoplanes sp. (strain 50/110) GN=acbC PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.921e-41
Identity = 106/272 (38.97%), Postives = 142/272 (52.21%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRK-EPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKF-GRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHELFYEEILDKATQ 810
            H ++  I    +GE  K  DT   IV +M  FG+ R+ EP          DVAG   + YRR T ++R+PTT++GLIDA V  K  VN+  +KNRLG Y     TLLD  FL TL    + NG AE++KI+       F LL+     LI+ +F GR    D    +AA    R     ML+   PNL E  L+R + YGHT+SP  E+     L HG A+ +DMA +  LA  RGLL   +  R+ A+ +  GL   H L   E+L+ A Q
Sbjct:   80 HGIDHSILVMRVGETVKDFDTAGRIVAAMDAFGLARRREPMIVVGGGVLMDVAGLVASLYRRGTPFLRVPTTLVGLIDAGVGAKTGVNFNGHKNRLGTYAPADLTLLDRRFLATLDRRHLSNGLAEMLKIALIKDAELFQLLERHGRVLIEERFQGRTGTGD----RAAVRALRAATHGMLEELGPNLWESRLERSVDYGHTFSPTIEMRALPALLHGEAVCVDMALTTVLAYRRGLLDVAQRDRIFAVMTALGLPTWHPLLTPEVLEAALQ 347          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CORDI (3-dehydroquinate synthase OS=Corynebacterium diphtheriae GN=aroB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.719e-25
Identity = 75/236 (31.78%), Postives = 118/236 (50.00%), Query Frame = 1
Query:   40 EKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLD-EFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSD---EEHRRLL 735
            E  K+L+      D + ++G  R +          TD+AGF  AA+ R    I++PTT++ ++DA V  K  +N    KN +GA+H P    +D   L +LP+ ++  G AE+IK    A     +L + +    L+K         DG +     E+    I    K+ + +L E GL  ++ YGHT+    EL      RHG+A+++ M + A LAN RGL+SD   E HR++L
Sbjct:   71 ETGKTLEVAGRCWDQLGEWGFSRSDLIIGFGGGAATDLAGFVAAAWMRGIKVIQVPTTLLAMVDAAVGGKTGINTAAGKNLVGAFHEPIAVFIDVDHLDSLPQDEIIAGSAEIIKTGFIADPRILELYEKDPAACLLK---------DGHL----PELIARSIAVKSKVVSQDLKESGLREILNYGHTFGHAVELRENFSWRHGNAVAVGMVFVAELANIRGLISDELVERHRKIL 293          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CORPS (3-dehydroquinate synthase OS=Corynebacterium pseudotuberculosis GN=aroB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.688e-24
Identity = 77/260 (29.62%), Postives = 122/260 (46.92%), Query Frame = 1
Query:   40 EKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDH------ELFYEEILDK 801
            E  K+L+   +  D +      RK+          TD+AGF  A + R    I +PTT++ ++DA V  K  +N    KN +GA+H P+   +D   + TLP+ +  +G AE+IK    A      L +E  E       GR+          A+ I R+ +    ++   +L E G   ++ YGHT+    EL      RHG+A+S+ M + A LA +RGL++DE + R   + S  GL   +      EL+   + DK
Sbjct:   71 EDGKNLNVAGDCWDVLGRKAFGRKDVIISLGGGAVTDLAGFVAACWMRGIAVIHVPTTLLSMVDAAVGGKTGINTSAGKNLVGAFHEPSGVFIDLDMIATLPDREKISGSAEIIKTGFIADTKILSLYEEDPEACFN---GRI---------LAELIGRS-VAAKARVVASDLREAGQREILNYGHTFGHAVELKEKYEWRHGNAVSVGMMFVAALARNRGLITDELYLRHKNILSSVGLPTTYPEGHFAELYQAMLRDK 317          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_THEPX (3-dehydroquinate synthase OS=Thermoanaerobacter sp. (strain X514) GN=aroB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.429e-24
Identity = 73/268 (27.24%), Postives = 126/268 (47.01%), Query Frame = 1
Query:    4 RLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHELFYEEILDKA 804
            R ++       GE +K+++    +++   D G++R             D+AGF  A Y R  ++++IPTT++  +D+ V  KVAVN    KN +GA+H P    +D   L TL + ++  G AE+IK         F+ ++     ++  K     D    I K + EI         K+ + +  E  L  ++ +GHT    +  L       HG A++I M Y+  LA + G + ++   R+ +L  R GL  D+E  ++E + KA
Sbjct:   62 RFDVSYEVIPAGETSKTMEMAQRLLEKAYDSGLLRDSSVIALGGGVVGDIAGFVAATYMRGIDFVQIPTTLLAQVDSSVGGKVAVNLKKGKNIVGAFHQPKMVYIDAAVLNTLDKREILGGLAEIIKYGIIWDFDLFEYIENNLHEILDLK----EDKLKHIVKKSCEIKG-------KIVSLDEKEENLRSILNFGHTIGHAIEALTGYEWYIHGEAVAIGMVYACKLALNLGYIDEKYFERIFSLIQRTGLPTDYEDLHKEDIIKA 318          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ARTCA (3-dehydroquinate synthase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=aroB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.702e-24
Identity = 69/209 (33.01%), Postives = 104/209 (49.76%), Query Frame = 1
Query:  145 TDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDH 771
            TD+AGF  A + R    I +PT+++G++DA V  K  +N    KN +GA+H PA  L D   L TLP  ++ +G AE++K    A        D     L++  F  V+D   E  +   E+    I    K+ + +L E GL  ++ YGHT     EL      RHG A+S+ M ++A LA   G LSD +  R  ++    GL + +
Sbjct:  112 TDLAGFVAATWLRGVKVIHMPTSLLGMVDASVGGKTGINTAEGKNLVGAFHPPAAVLADLDTLDTLPRNELISGMAEVVKCGFIA--------DPAILELVEKDFAAVTDPRSETLR---ELIERAIAVKAKVVSEDLKESGLREILNYGHTLGHAIELVERYSWRHGAAVSVGMMFAAELARSVGRLSDADADRHRSILEGLGLPVTY 309          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_THEP3 (3-dehydroquinate synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=aroB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.655e-23
Identity = 71/268 (26.49%), Postives = 127/268 (47.39%), Query Frame = 1
Query:    4 RLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHELFYEEILDKA 804
            R ++       GE +K+++    +++   D+G++R             D+AGF  A Y R  ++++IPTT++  +D+ V  KVAVN    KN +GA+H P    +D   L TL + ++  G AE+IK         F+ ++     ++  +     D    I K + EI         K+ + +  E  L  ++ +GHT    +  L       HG A++I M Y+  LA + G + ++   R+ +L  R GL  D+E  ++E + +A
Sbjct:   62 RFDVSYEVIPAGETSKTMEMAQRLLEKAYDYGLLRDSSVIALGGGVVGDIAGFVAATYMRGIDFVQIPTTLLAQVDSSVGGKVAVNLKKGKNIIGAFHQPKMVYIDTAVLNTLDKREILGGLAEIIKYGIIWDFSLFEYIESNIYEILDLE----EDKLRHIIKKSCEIKG-------KIVSLDEKEENLRSILNFGHTIGHAIEALTGYERYIHGEAVAIGMVYACKLALNLGYIDEKYFERIFSLIQRTGLPTDYEDLHKEDIVEA 318          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BUCBP (3-dehydroquinate synthase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=aroB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.823e-23
Identity = 67/258 (25.97%), Postives = 129/258 (50.00%), Query Frame = 1
Query:    1 HRLELKIHQTMI--GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVS---DHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            H+L  ++   +I  GE  K++DT   I+ ++  +   R             D+ GF  + Y+R   +++IPTT++  +DA +  K +VN+   KN +G++  P+  +++F FL TLP  Q+ +G AE++K +    +  F+ L+E  ER++K  +  +S   +   EIK +  E +   I + + L   + +   ++  + YG TW             HG A+S+ +  ++  +   G + D +  R+++L  R GL
Sbjct:   54 HKLGAQVKNVIISDGEIYKNIDTVEIILSTLLKYSYCRDAVLIALGGGVIGDITGFVASIYQRGIKFVQIPTTLLAQVDASIGGKTSVNHVLGKNMIGSFWQPSSVIINFDFLNTLPRRQLISGIAEIVKYAVSFDVNFFNWLEENLERVLKLDYSALSYCINRCCEIKISIVEKDEKEIHDRMLLNLGHTYGHAIETFLGYG-TW------------LHGEAVSVGIVMASKTSELLGFMKDNDITRIISLLQRVGL 298          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PELTS (3-dehydroquinate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=aroB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 78/242 (32.23%), Postives = 116/242 (47.93%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+L T   + D   + G+ R+            DVAGF  A Y R  +++++PTT++  +D+ V  KVAVN+   KN +GA++ P   L D   L+TLP  Q+R+G AE+IK         F  L++  E L+          +GE    A  +  +   +   +E     E GL  V+ YGHT    +  L       HG A+ I MA  A LA   G+L   E  R++ L  +AGL
Sbjct:   73 GEEHKTLATAGRLYDRAFEAGLDRRSSIVALGGGVVGDVAGFVAATYMRGISFVQVPTTLLAQVDSSVGGKVAVNHPRGKNIIGAFYQPRLVLADVDTLKTLPVRQMRSGLAEVIKYGVIWSREFFAWLEQNIEALL----------NGEAGALAYAVRESCRIKAQVVEQDET-EQGLRAVLNYGHTVGHAVEALTHYRVYTHGEAVGIGMAVEAGLAVALGMLKRSEGGRIIRLIRQAGL 303          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_MYCTU (3-dehydroquinate synthase OS=Mycobacterium tuberculosis GN=aroB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.073e-22
Identity = 76/261 (29.12%), Postives = 118/261 (45.21%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAAD---EINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            HR+E+        E  K L     I + +   GI RK+          TDVAGFA A + R  + + +PTT++G++DA V  K  +N    KN +GA+H P   L+D   L+TLP  ++  G AE++K    A     DL++              +D    +  A D   E+ R  I    ++   +  E  L  ++ YGHT     E       RHG A+S+ + ++A LA   G L D   +R   + S  GL + ++
Sbjct:   67 HRIEIPD-----AEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPLAVLVDLATLQTLPRDEMICGMAEVVKAGFIADPVILDLIE--------------ADPQAALDPAGDVLPELIRRAITVKAEVVAADEKESELREILNYGHTLGHAIERRERYRWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSLGLPVSYD 308          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_MYCBO (3-dehydroquinate synthase OS=Mycobacterium bovis GN=aroB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.073e-22
Identity = 76/261 (29.12%), Postives = 118/261 (45.21%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAAD---EINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            HR+E+        E  K L     I + +   GI RK+          TDVAGFA A + R  + + +PTT++G++DA V  K  +N    KN +GA+H P   L+D   L+TLP  ++  G AE++K    A     DL++              +D    +  A D   E+ R  I    ++   +  E  L  ++ YGHT     E       RHG A+S+ + ++A LA   G L D   +R   + S  GL + ++
Sbjct:   67 HRIEIPD-----AEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPLAVLVDLATLQTLPRDEMICGMAEVVKAGFIADPVILDLIE--------------ADPQAALDPAGDVLPELIRRAITVKAEVVAADEKESELREILNYGHTLGHAIERRERYRWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSLGLPVSYD 308          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ACBC_ACTS53.921e-4138.972-epi-5-epi-valiolone synthase OS=Actinoplanes sp.... [more]
AROB_CORDI6.719e-2531.783-dehydroquinate synthase OS=Corynebacterium dipht... [more]
AROB_CORPS5.688e-2429.623-dehydroquinate synthase OS=Corynebacterium pseud... [more]
AROB_THEPX7.429e-2427.243-dehydroquinate synthase OS=Thermoanaerobacter sp... [more]
AROB_ARTCA9.702e-2433.013-dehydroquinate synthase OS=Arthrobacter chloroph... [more]
AROB_THEP31.655e-2326.493-dehydroquinate synthase OS=Thermoanaerobacter ps... [more]
AROB_BUCBP2.823e-2325.973-dehydroquinate synthase OS=Buchnera aphidicola s... [more]
AROB_PELTS6.289e-2332.233-dehydroquinate synthase OS=Pelotomaculum thermop... [more]
AROB_MYCTU1.073e-2229.123-dehydroquinate synthase OS=Mycobacterium tubercu... [more]
AROB_MYCBO1.073e-2229.123-dehydroquinate synthase OS=Mycobacterium bovis G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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