FC877946

Overview
NameFC877946
Unique NameFC877946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length499
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877946 vs. ExPASy Swiss-Prot
Match: BMS1_HUMAN (Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.828e-21
Identity = 40/79 (50.63%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  267 QMNIAELNDLDEVTRI--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLK 497
            Q+N AE  D D+  R+  EGF+ G Y+ +EI +VP E V+ FDP +P+++GG+G  + NVGY+Q RLK+HR W+KK+LK
Sbjct:  860 QLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHR-WYKKILK 937          

HSP 2 Score: 38.1206 bits (87), Expect = 1.828e-21
Identity = 23/64 (35.94%), Postives = 36/64 (56.25%), Query Frame = 2
Query:    2 DYEDLETCEKHEGQCEDNSGSVGIA---------NEDESAVEEWRLKKLTLRAKFNAQYDASES 166
            D+EDLET + H+G+   N+ +  I          +E+ESA ++   KK  L+  F+A+YD  ES
Sbjct:  782 DFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDAEYDEGES 845          
BLAST of FC877946 vs. ExPASy Swiss-Prot
Match: BMS1_SCHPO (Ribosome biogenesis protein BMS1 homolog OS=Schizosaccharomyces pombe GN=SPBC31E1.06 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.208e-18
Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  228 LDWLTRRRLNFAKQM--NIAELNDLDEVTR--IEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLK 497
            +DW T  +   A+Q+  N     D+D  +R  IEG++ GTY+ + I+DVPFE VE+FD  +PV+VGG+   +Q  G +Q R+K+HR WHKK+LK
Sbjct:  685 VDWYTEEKEKIARQLVINREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYPVVVGGLLPNEQRYGLVQVRIKRHR-WHKKILK 777          

HSP 2 Score: 26.9498 bits (58), Expect = 2.208e-18
Identity = 21/58 (36.21%), Postives = 29/58 (50.00%), Query Frame = 2
Query:    2 DYEDLETCE-KHEGQCEDNSGSVGIANEDESA--------VEEWRLKKLTLRAKFNAQ 148
            D+EDLE  E   + + E++SGS   A  +ESA         EE   KK  LR +F  +
Sbjct:  618 DFEDLEDEENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRLRFEEE 675          
The following BLAST results are available for this feature:
BLAST of FC877946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BMS1_HUMAN1.828e-2150.63Ribosome biogenesis protein BMS1 homolog OS=Homo s... [more]
BMS1_SCHPO2.208e-1845.74Ribosome biogenesis protein BMS1 homolog OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO17RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877946 ID=FC877946; Name=FC877946; organism=Citrus clementina; type=EST; length=499bp
TGATTATGAAGATTTAGAAACATGTGAGAAGCATGAAGGGCAATGTGAGG
ATAATTCTGGCAGTGTAGGAATTGCGAATGAAGATGAATCAGCAGTTGAG
GAGTGGAGATTGAAAAAGCTCACACTACGTGCAAAATTCAATGCACAATA
TGATGCATCTGAATCTCCTGAGCAGGAAATGCATGAAAAAGATGTGGCAA
AGTTTCATTGTGTCCAGCCTAACGAAATTGGACTGGTTGACAAGGAGAAG
ATTGAATTTTGCAAAACAAATGAATATAGCTGAGCTCAATGATCTCGACG
AGGTCACTCGAATAGAGGGCTTTCAAACAGGAACATATCTTGGAATGGAG
ATACATGATGTTCCTTTTGAGATGGTTGAATATTTTGATCCTTGCCATCC
TGTTTTGGTTGGAGGAATTGGTCTTGGCAAGCAAAATGTTGGATACATGC
AGGCTAGGTTAAAGCAACACAGATGGTGGCACAAGAAGGTACTCAAGAG
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