FC877947

Overview
NameFC877947
Unique NameFC877947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11348 contig Ccv1_Contig11348:34..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC877947 vs. ExPASy Swiss-Prot
Match: Y4837_ARATH (KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.172e-18
Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = 1 
Query:  346 VYRILCPSRXXXXXXXXXXXXXXSLREETQAKITVADTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPP---CAMNTDELVQIS*KP 855
            VYRILCP                ++R  T+AKI V D + G  +RVI IY S         +  +    TK E+ EP C AQDALLKV+D I+  D      ++ D +++    RLLVP +    L+GK G+ I+R+R  T A+++V+  D   P   CAM  D +V IS +P
Sbjct:   37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSV-------KEKQEEIGFTKSEN-EPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNK-ECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEP 200
The following BLAST results are available for this feature:
BLAST of FC877947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4837_ARATH1.172e-1836.99KH domain-containing protein At4g18375 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA44BD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877947 ID=FC877947; Name=FC877947; organism=Citrus clementina; type=EST; length=857bp
ATTGGAACCCCAAGGTTGAAGGTCCCCCTTTTCTCTTTCCCTCCCCAAAA
TGGAGAGCGCCACTCGCCCAAACAAGCGGCAATCACTGTTTCGTTAATTC
TTTTAATTCAAACTTTTTCTGTTGTTATCTATCTCTTCTCTATTAGTTTC
TCTTGTGCGTTTCATCTCCTCTCTCACTCTCGCTGTATCAGATTTTGTTG
CATTATGGATGCAAGTAAGAGGAATTTTTTCAAGAAACGACCGAACAACC
AATTCAAGAGAAAAGGGGTTGTTGGCATCAAGAAAGGAAACTGGAGCAAT
TCTAGCCGTGAACAATCTTTTGGGAATTCTCAACCTGCTGACACTGTCTA
TCGCATACTTTGCCCTTCTAGAAAAATTGGTGGTGTTATTGGAAAGGGTG
GCAACATAGTCAAATCCTTGAGGGAGGAGACCCAGGCTAAGATCACTGTT
GCTGATACAATTCCTGGTTCGGAGGAGAGAGTGATTATTATATATAGTTC
TCCTACAAAAATTGCTAAAACACAGAATAAGGATGATGATTCAGCTGCTG
AGACCAAAAAGGAGTCCATGGAGCCTCACTGTGCTGCCCAGGATGCTCTT
CTAAAAGTTCATGACAGGATTATTGAGGAAGATCTTTTTGGTGGAATGGC
ATCTGATGATGACAATGAAAACAGTACCGTCACTGCACGACTACTTGTTC
CGAACAATATGGTTGGATGTCTTTTGGGAAAACGTGGTGATGTCATTCAG
AGATTGCGAAGTGAGACGGGTGCAAACATACGTGTGCTTCCTGCAGATCG
TCTTCCTCCCTGTGCTATGAACACTGATGAATTGGTGCAGATATCTTGAA
AACCAAA
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