FC877948

Overview
NameFC877948
Unique NameFC877948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length785
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9370 contig Ccv1_Contig9370:19..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877948 vs. ExPASy Swiss-Prot
Match: K6PF7_ARATH (6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.706e-74
Identity = 129/156 (82.69%), Postives = 141/156 (90.38%), Query Frame = 2
Query:  317 SNNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGG 784
            S+  +++ KIV GP GY+L+DVPHL DY+PDLPTYPNPLQDNPAYSVVKQYFVH DD+VP+KVVVHKD PRG HFRRAGPRQKVYFESDEV+ACIVTCGGLCPGLNTVIRE+V SL YMYGVKR+LGIDGGYRGFYAKNTI L  K VNDIHKRGG
Sbjct:    2 SSPRSNKPKIVNGPGGYILQDVPHLIDYLPDLPTYPNPLQDNPAYSVVKQYFVHADDSVPEKVVVHKDGPRGVHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREVVSSLSYMYGVKRILGIDGGYRGFYAKNTIPLNSKVVNDIHKRGG 157          
BLAST of FC877948 vs. ExPASy Swiss-Prot
Match: K6PF3_ARATH (6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.218e-73
Identity = 128/152 (84.21%), Postives = 138/152 (90.79%), Query Frame = 2
Query:  329 NSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGG 784
            +S+ KI+ G  GYVLEDVPHLSDY+P LPTYPNPLQDNPAYSVVKQYFV  DD+VPQK+VVHKD PRG HFRRAGPRQKVYFESDEV+ACIVTCGGLCPGLNTVIREIV SL YMYGVKR+LGIDGGYRGFYAKNT++L  K VNDIHKRGG
Sbjct:    6 SSKPKIINGSCGYVLEDVPHLSDYLPGLPTYPNPLQDNPAYSVVKQYFVDADDSVPQKIVVHKDGPRGIHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREIVSSLSYMYGVKRILGIDGGYRGFYAKNTVSLDSKVVNDIHKRGG 157          
BLAST of FC877948 vs. ExPASy Swiss-Prot
Match: K6PF1_ARATH (6-phosphofructokinase 1 OS=Arabidopsis thaliana GN=PFK1 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.012e-71
Identity = 128/157 (81.53%), Postives = 137/157 (87.26%), Query Frame = 2
Query:  314 ASNNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGG 784
            +S+  NS RKIVTGPAGY+LEDVPH SD  PD PTYPNPLQDN AYSVVKQYFV  DDTVPQK+VVH DSPRGTHFRRAGPRQ+VYFESD+V ACIVTCGGLCPGLNTVIREIV  L YMYGVKR+LGIDGGYRGFYA+NTI L  K VNDIH+ GG
Sbjct:    2 SSSVPNSDRKIVTGPAGYILEDVPHFSDDFPDHPTYPNPLQDNAAYSVVKQYFVDEDDTVPQKIVVHPDSPRGTHFRRAGPRQRVYFESDDVLACIVTCGGLCPGLNTVIREIVCGLSYMYGVKRILGIDGGYRGFYARNTIHLDLKTVNDIHRSGG 158          
BLAST of FC877948 vs. ExPASy Swiss-Prot
Match: K6PF6_ARATH (6-phosphofructokinase 6 OS=Arabidopsis thaliana GN=PFK6 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.071e-68
Identity = 122/157 (77.71%), Postives = 137/157 (87.26%), Query Frame = 2
Query:  314 ASNNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGG 784
            ASN  + Q K+V GPAGYVLEDVPHLSDYI DLPTYPNPLQ N AYSVV+QYFV  DDTV +K+VVHKDSPRGTHFRRAGPRQKVYF+  +V ACIVTCGGLCPGLNTVIREIV  L++MYGV  V+G+D G+RGFY+KNT+ALTPK V+DIHKRGG
Sbjct:    2 ASNGVDEQIKLVEGPAGYVLEDVPHLSDYILDLPTYPNPLQSNAAYSVVRQYFVDEDDTVQEKIVVHKDSPRGTHFRRAGPRQKVYFKPSDVRACIVTCGGLCPGLNTVIREIVCGLHFMYGVTEVIGVDCGFRGFYSKNTVALTPKTVSDIHKRGG 158          
BLAST of FC877948 vs. ExPASy Swiss-Prot
Match: K6PF4_ARATH (6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.358e-55
Identity = 99/141 (70.21%), Postives = 118/141 (83.69%), Query Frame = 2
Query:  362 GYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGG 784
            G+VLEDVPHL+ ++PDLP+YPNPL+++ AY++VK+ FV  +D V Q +VV K S RG HFRRAGPR++VYF SDEV ACIVTCGGLCPG+NTVIREIV  L  MYGV  +LGI GGYRGFY+KNT+ LTPK VNDIHKRGG
Sbjct:   68 GFVLEDVPHLTKFLPDLPSYPNPLKESQAYAIVKRTFVSSEDVVAQNIVVQKGSKRGVHFRRAGPRERVYFRSDEVKACIVTCGGLCPGINTVIREIVCGLNNMYGVNNILGIQGGYRGFYSKNTMNLTPKVVNDIHKRGG 208          
BLAST of FC877948 vs. ExPASy Swiss-Prot
Match: K6PF2_ARATH (6-phosphofructokinase 2 OS=Arabidopsis thaliana GN=PFK2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.854e-26
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 2
Query:  425 NPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKD--SPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGG 784
            NPL+DNP +     +++   D +  +V       S     + RAGPR+++ +E   V A IVTCGGLCPG+NTVIRE+V  L+ +YGV+ + GI  GYRGFY+   + L PK V+D HK+GG
Sbjct:   21 NPLEDNPYFHPSNGFYITPSDVILAQVAYDHSAHSQSRVAYHRAGPRREIMYEPSAVKAAIVTCGGLCPGMNTVIRELVVGLWELYGVREIYGIPAGYRGFYSMKAVKLDPKAVHDWHKKGG 142          
BLAST of FC877948 vs. ExPASy Swiss-Prot
Match: K6PF5_ARATH (6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.958e-18
Identity = 61/162 (37.65%), Postives = 85/162 (52.47%), Query Frame = 2
Query:  380 VPHLSDYIPDLPTYPNPL---QDNPAYSVVKQY--------FVHVDDTVPQKVVVHKDSPRGTH--------------FRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKN--TIALTPKGVNDIHKRGG 784
            +PH++D +PD     +       +P    V  Y        +++ +D V  KV+ +  SP                    RAGPR+K+YF  +EV A I+TCGGLCPGLN VIR IV +L  +YGVK ++GI  GYRGF  K+   + L+ K V +IH  GG
Sbjct:   87 IPHITDVLPDAEAIRSTFCLKMRSPTEDFVGGYPSDEEWHGYINNNDRVLLKVISYS-SPTSAGAECLDHDCSWVEQWIHRAGPREKIYFRPEEVKAAIITCGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFSDKDLTEMPLSRKVVQNIHLSGG 246          
The following BLAST results are available for this feature:
BLAST of FC877948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
K6PF7_ARATH1.706e-7482.696-phosphofructokinase 7 OS=Arabidopsis thaliana GN... [more]
K6PF3_ARATH3.218e-7384.216-phosphofructokinase 3 OS=Arabidopsis thaliana GN... [more]
K6PF1_ARATH3.012e-7181.536-phosphofructokinase 1 OS=Arabidopsis thaliana GN... [more]
K6PF6_ARATH1.071e-6877.716-phosphofructokinase 6 OS=Arabidopsis thaliana GN... [more]
K6PF4_ARATH1.358e-5570.216-phosphofructokinase 4, chloroplastic OS=Arabidop... [more]
K6PF2_ARATH3.854e-2645.086-phosphofructokinase 2 OS=Arabidopsis thaliana GN... [more]
K6PF5_ARATH2.958e-1837.656-phosphofructokinase 5, chloroplastic OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA78AH04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877948 ID=FC877948; Name=FC877948; organism=Citrus clementina; type=EST; length=785bp
CCTTTCAAAACCAACTAAACATTTACGTAGCTGTTTCTAATTTTTTTAAT
TTTTTCTTTTACTTTGGTCAAAAACACTCTGGTTCTTGCTTGTTTCCTAT
AAATATGGATTCCTATTGTTCGTTTTCTTTTGAATGGACTCAGTAGCTCT
ATCATCACCCTCACCATCACCCTCAACTTCAACTTCTTCTTTGAAATCGC
GTTTCCTGCAAAAGCCTTCCCAGAACTCGAAGCAGTTGTCATCTTCGGTC
AGTTTTAGTTCGAGTTCGTGTTCCGATTTTCGATCTCCGACAAAAGCTAT
TTCGATGGCGGCGGCATCCAACAATGGAAACTCACAGCGAAAGATTGTGA
CTGGTCCTGCTGGTTATGTTCTTGAAGATGTTCCTCATTTGTCTGATTAT
ATCCCCGATCTTCCTACATATCCGAATCCGCTGCAAGACAATCCTGCATA
TTCTGTTGTTAAGCAATATTTTGTTCATGTGGATGACACGGTACCACAAA
AGGTTGTTGTTCATAAGGATAGTCCAAGAGGGACTCACTTCCGAAGAGCT
GGACCTCGTCAAAAGGTGTATTTTGAGTCAGATGAAGTTTATGCTTGTAT
CGTGACATGTGGTGGCTTATGCCCTGGACTCAACACGGTGATTAGAGAGA
TAGTTTACAGTCTTTACTACATGTATGGAGTGAAGAGAGTGCTGGGAATT
GATGGAGGATACAGGGGCTTTTATGCTAAAAATACAATTGCTCTAACACC
TAAGGGTGTGAATGACATCCATAAACGTGGTGGAA
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