FC877950

Overview
NameFC877950
Unique NameFC877950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10477 contig Ccv1_Contig10477:1..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877950 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.495e-22
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  539 EMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTK 814
            +++SK+G+ YG+ GNNLPSP +S+   IKS+KA  VK+YDA+P+ L  L  T++ V+I VPN              D+WVRTN+LPY P T+
Sbjct:   37 DLASKIGINYGRRGNNLPSPYQSINF-IKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNH-QITALSSNQTIADEWVRTNILPYYPQTQ 126          

HSP 2 Score: 37.7354 bits (86), Expect = 6.495e-22
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 1
Query:  793 PLSPRYQIRYLLVGNEIFSLPE*SIWPHLVPGMR*IRKSLK 915
            P  P+ QIR++LVGNEI S    ++  +LVP MR I  SL+
Sbjct:  120 PYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLR 160          
BLAST of FC877950 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.874e-17
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  545 SSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGT 811
            ++ +GV YGQ+G+NLPSP + + L IKS+ AT+VK+YDANP+ILKA  NT I+  I + NE               W++ NV P+LP T
Sbjct:   26 TTSIGVNYGQIGDNLPSPTDVIPL-IKSIGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSKMKDPSKAL--TWIKQNVTPFLPAT 111          

HSP 2 Score: 28.4906 bits (62), Expect = 8.874e-17
Identity = 13/40 (32.50%), Postives = 23/40 (57.50%), Query Frame = 1
Query:  793 PLSPRYQIRYLLVGNEIFSLPE*SIWPHLVPGMR*IRKSL 912
            P  P   I  + +GNEI +L + S+  +L+P M+ +  +L
Sbjct:  106 PFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSAL 145          
BLAST of FC877950 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.828e-13
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 2
Query:  485 VVAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTK 814
            +V  + ++ + F + G   M+SK+G+CYG+  +NLPSP    EL I+ L    V+IYDAN  +LKA  NT I++ I VPN              D W+  N+LPY P TK
Sbjct:    7 LVFWIFVSILAFLNFG---MASKIGICYGRNADNLPSPNRVSEL-IQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPN-ADLLAFAQFQSNVDTWLSNNILPYYPSTK 111          
BLAST of FC877950 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 1.507e-11
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 2
Query:  476 MGLVVAHLLLASVMFFSIGSAEM--SSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTK 814
            + L +A ++L  ++   + S E+  +  VGVCYG LGNNLP   + V+L  KS    R+++YD N   L+AL+ ++I+V + VPN              + WV+ NV  + P  K
Sbjct:    8 IALQMAAIILLGLL---VSSTEIVGAQSVGVCYGMLGNNLPPASQVVQLY-KSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNS-DLQNIAANPSNANNWVQRNVRNFWPAVK 117          

HSP 2 Score: 26.5646 bits (57), Expect = 1.507e-11
Identity = 14/38 (36.84%), Postives = 23/38 (60.53%), Query Frame = 1
Query:  802 PRYQIRYLLVGNEIFSLP-E*SIWPHLVPGMR*IRKSL 912
            P  + RY+ VGNE+  +    S+  +L+P MR IR ++
Sbjct:  114 PAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAI 151          
BLAST of FC877950 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 2.515e-11
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  554 VGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTK 814
            +GV YGQ+ +NLP P E+V+L ++S    +V++Y A+P I+KAL  T + + I   N               QW+ +NVLP+ P +K
Sbjct:   26 IGVNYGQVADNLPPPSETVKL-LQSTSIQKVRLYGADPAIIKALAGTGVGIVIGAAN-GDVPSLASDPNAATQWINSNVLPFYPASK 110          

HSP 2 Score: 26.9498 bits (58), Expect = 2.515e-11
Identity = 13/41 (31.71%), Postives = 24/41 (58.54%), Query Frame = 1
Query:  793 PLSPRYQIRYLLVGNEIFSLPE*SIWPHLVPGMR*IRKSLK 915
            P  P  +I  + VGNEI    + ++   L+P M+ ++K+L+
Sbjct:  104 PFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALE 144          
BLAST of FC877950 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.528e-11
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  548 SKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTK 814
            S +G+ YGQ+ NNLP P+  + L+ KS+ AT+VK+YDA+P+ L+A   +  ++++ + NE               WV+ NV  YLP TK
Sbjct:   25 SSIGINYGQVANNLPPPKNVIPLL-KSVGATKVKLYDADPQALRAFAGSGFELTVALGNE--YLAQMSDPIKAQGWVKENVQAYLPNTK 110          

HSP 2 Score: 21.557 bits (44), Expect = 2.528e-11
Identity = 11/37 (29.73%), Postives = 21/37 (56.76%), Query Frame = 1
Query:  802 PRYQIRYLLVGNEIFSLPE*SIWPHLVPGMR*IRKSL 912
            P  +I  ++VGNE+ +  + ++   L P M+ I  +L
Sbjct:  107 PNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGAL 143          
The following BLAST results are available for this feature:
BLAST of FC877950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
EA6_ARATH6.495e-2246.74Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E1311_ARATH8.874e-1746.07Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1312_ARATH2.828e-1340.00Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
GUB_NICPL1.507e-1133.91Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E137_ARATH2.515e-1136.78Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E1310_ARATH2.528e-1138.20Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA44BD07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877950 ID=FC877950; Name=FC877950; organism=Citrus clementina; type=EST; length=917bp
CAGACGACAGTGTAAAAGAAGCTTTAGCTTCCACTGTTGCACATGGACCG
ATGGGCGGGCAGCGTGAGCGGCAAGCTCTCGAACGGCTGATTGCTCATTT
TGGAATCTCGCCCTTTTTTTATTTTTCTCCCTATCCTTCCCGGAAACCAA
TTAAAAGCTCAAATGTGACTTAACAGAAGGCCCCACGATTCTCATCTCTC
CACTGATTCCTGATCCTCTTCATTGCCTTGGGCCTCTGCACCCTTATTAT
TTTATCATTTCTTCCTTTCTTTTCACTTCCTTGATGTGGGAAAGAGAGAT
AAAAATTAATTAGACGTCAGTCCACCGTATCAACAAAGTGACGACCCTCG
AGTCTTTGACGCATTATTAAATGCTGTAGCTCTCAACTCTCCCTGGCAAC
AGCGTCACACAGTCTTTTGAACACTACTCCTCCGGTTTCCGTCTCTGCTT
CCCAAGAAACAAGCCCATAACGAAGATGGGTCTTGTTGTTGCTCATCTGT
TGTTGGCCTCCGTTATGTTCTTCTCTATTGGAAGTGCAGAGATGTCAAGC
AAAGTGGGGGTATGCTACGGTCAGCTGGGGAACAACCTTCCATCGCCACA
GGAGTCGGTGGAACTCATGATCAAATCTCTGAAAGCAACACGGGTCAAAA
TCTACGATGCCAATCCGAAGATCCTGAAAGCCCTGAAGAACACAGACATC
CAAGTGTCCATCATGGTTCCGAATGAAATCATCAACAACATTTCCTTAAG
CAGCCAATCCCTCTCCGACCAGTGGGTCCGAACCAACGTCCTCCCTTATC
TCCCCGGTACCAAATCCGATATCTCCTCGTCGGCAACGAGATCTTTAGCC
TCCCCGAGTAATCAATCTGGCCCCACCTCGTACCGGGCATGCGTTAAATC
AGAAAATCCCTGAAACC
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