FC877953

Overview
NameFC877953
Unique NameFC877953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length854
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877953_ssr418 microsatellite FC877953_ssr418:418..429. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12442 contig Ccv1_Contig12442:44..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.320e-59
Identity = 119/206 (57.77%), Postives = 138/206 (66.99%), Query Frame = 2
Query:  128 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 745
            MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAEDAI GRDGY+FDG RLRVELAH                                             SR SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT  EDMKYA++KLDDTEFRN ++ G + V+
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGP-------------SRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVR 193          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.849e-41
Identity = 96/188 (51.06%), Postives = 113/188 (60.11%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            IYVGNLP DIR  +VED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPP--------------------SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 181          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 3.722e-41
Identity = 95/188 (50.53%), Postives = 113/188 (60.11%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.860e-41
Identity = 94/188 (50.00%), Postives = 113/188 (60.11%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPP-SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 201          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.348e-41
Identity = 93/194 (47.94%), Postives = 116/194 (59.79%), Query Frame = 2
Query:  134 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            G   + +YVGNLP D+RE EVED+F+KYGRI  +++K   R P + FVEFE+ RDAEDA+R RDGY FDG R+RVE                                                 R + YRVIV GLP + SWQDLKDHMR AGDVC+A+V+RD  GT GVV++T  ED+KYA+RKLDDT+FR+
Sbjct:    5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGP----------QRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDDTKFRS 184          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.414e-40
Identity = 95/188 (50.53%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            IYVGNLP DIR  +VED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+  RDGY++DG RLRVE                                                SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPP----------SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 191          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 5.374e-40
Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 5.374e-40
Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 5.374e-40
Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.374e-40
Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
The following BLAST results are available for this feature:
BLAST of FC877953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SFRS1_ARATH2.320e-5957.77Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SFR1B_DANRE2.849e-4151.06Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK3.722e-4150.53Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFRS1_XENTR4.860e-4150.00Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]
RSP3_CAEEL6.348e-4147.94Probable splicing factor, arginine/serine-rich 3 O... [more]
SFR1A_DANRE1.414e-4050.53Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
SFRS1_PONAB5.374e-4049.47Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG5.374e-4049.47Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE5.374e-4049.47Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN5.374e-4049.47Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877953 ID=FC877953; Name=FC877953; organism=Citrus clementina; type=EST; length=854bp
CTCTGGAGCTCTCCATCGGAAGCAGCGGTCGTTTTCGGTAAGGACCGGCG
GGTCGTCACGTGGTGGTTCAGCGACGCTTCTCCTGCTCATAAATCTTCGT
GAAATTTTATAGTCCTTACCATCAGAAATGAGTGGTCGTTTTTCTCGTAC
AATCTATGTTGGCAACCTGCCCTCTGATATAAGAGAATATGAAGTTGAGG
ATCTCTTTTACAAGTATGGCCGTATATTGGATATTGAATTAAAGATCCCC
CCTCGCCCACCATGTTATTGTTTTGTTGAGTTTGAGAATGCTCGTGATGC
CGAAGATGCTATTAGAGGTCGTGATGGCTATAACTTTGATGGTTGTCGTT
TAAGGGTTGAGCTCGCCCATGGTGGTAGTGGTAGAGGTCCATCATCAAGT
GATCGTCGTGGTGGCTATGGTGGTGGTGGTGCTGCTGCTGGTGGTGCTGG
TGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTCGTTTTG
GCATCTCACGCCATTCTGAATATCGAGTTATTGTGCGCGGACTTCCTTCT
TCAGCTTCCTGGCAGGATTTAAAGGATCATATGCGAAAAGCAGGCGATGT
TTGTTTTGCTGAAGTTTCCCGTGACAGTGAGGGGACTTATGGGGTCGTTG
ATTATACTAATCCTGAAGACATGAAATATGCAATTCGGAAACTTGATGAC
ACTGAATTTAGAAATCCTTGGGCAAGAGGGCGCATAACGGTGAAAAGATA
CGATCGTAGTCCATCGAGAAGCCGCAGTAGAAGCCGAAGTAGAAGCCGAA
GCAGAAGCAGAATTGTGCGAAGAAATAGAAGTAAATCATTAGAGCGTTCT
GTTT
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