FC877953
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.320e-59 Identity = 119/206 (57.77%), Postives = 138/206 (66.99%), Query Frame = 2 Query: 128 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 745 MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAEDAI GRDGY+FDG RLRVELAH SR SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT EDMKYA++KLDDTEFRN ++ G + V+ Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGP-------------SRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVR 193
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.849e-41 Identity = 96/188 (51.06%), Postives = 113/188 (60.11%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPP--------------------SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 181
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 168.703 bits (426), Expect = 3.722e-41 Identity = 95/188 (50.53%), Postives = 113/188 (60.11%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 4.860e-41 Identity = 94/188 (50.00%), Postives = 113/188 (60.11%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SR SEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPP-SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 201
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 6.348e-41 Identity = 93/194 (47.94%), Postives = 116/194 (59.79%), Query Frame = 2 Query: 134 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 G + +YVGNLP D+RE EVED+F+KYGRI +++K R P + FVEFE+ RDAEDA+R RDGY FDG R+RVE R + YRVIV GLP + SWQDLKDHMR AGDVC+A+V+RD GT GVV++T ED+KYA+RKLDDT+FR+ Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGP----------QRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDDTKFRS 184
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 1.414e-40 Identity = 95/188 (50.53%), Postives = 112/188 (59.57%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ RDGY++DG RLRVE SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPP----------SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 191
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3) HSP 1 Score: 164.851 bits (416), Expect = 5.374e-40 Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3) HSP 1 Score: 164.851 bits (416), Expect = 5.374e-40 Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3) HSP 1 Score: 164.851 bits (416), Expect = 5.374e-40 Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2) HSP 1 Score: 164.851 bits (416), Expect = 5.374e-40 Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182 The following BLAST results are available for this feature:
BLAST of FC877953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877953 ID=FC877953; Name=FC877953; organism=Citrus clementina; type=EST; length=854bpback to top |