FC877980
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: TRUA_HUMAN (tRNA pseudouridine synthase A OS=Homo sapiens GN=PUS1 PE=1 SV=3) HSP 1 Score: 127.487 bits (319), Expect = 9.678e-29 Identity = 85/202 (42.08%), Postives = 108/202 (53.47%), Query Frame = 1 Query: 73 PSPSLSPRQ----EPDPKRLKMSATTTS------------DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 618 P PS SPR EP P S D E +G D +R+ +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGVSA GQVVS + + ID ++E++N +LP+ IRI G KRVT FN+K CD R Y YLLP FA +H+DR+ Sbjct: 21 PRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF---AHKDRD 216
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_YARLI (tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica GN=PUS1 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.803e-28 Identity = 66/176 (37.50%), Postives = 99/176 (56.25%), Query Frame = 1 Query: 91 PRQEPDPKRLKMSATTTSDDERDLIPAAAGADSTTK----------RQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 588 PR + K+ KM D +R+ G D+ K RQ +RK+A YCG GY GMQ NP KTIEGD+ +A +GA+S+ + +P++ + R+ARTDKGV A G V+S + I+ +VE++N +LP Q+R++G R +F +K C R Y YL+P ++ Sbjct: 37 PRGDHQAKKQKMDRR--GDRQREQEKQGEGRDTRRKTDGPLVADEVRQ--PKRKVACMIGYCGTGYHGMQLNPPQKTIEGDIFQAFVKAGAISQNNADDPKKSAFMRAARTDKGVHAAGNVISLKMIIEDENIVEKINSHLPEQLRVWGVSRTNKAFECRKLCSSRVYEYLMPTYS 208
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: TRUA_RAT (tRNA pseudouridine synthase A OS=Rattus norvegicus GN=Pus1 PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.825e-27 Identity = 77/184 (41.85%), Postives = 103/184 (55.98%), Query Frame = 1 Query: 79 PSLSPRQEPDPKRLKMSATTTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 618 P P +PD K + E G D R+L KR KI + AY G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA GQVVS + + ID +++++N +LP+ IRI G KRVT FN+K CD R Y Y+LP FA +H+DR+ Sbjct: 37 PPALPSHQPDRKG--RGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF---AHKDRD 212
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: TRUA_MOUSE (tRNA pseudouridine synthase A OS=Mus musculus GN=Pus1 PE=1 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 2.384e-27 Identity = 79/188 (42.02%), Postives = 107/188 (56.91%), Query Frame = 1 Query: 67 KLPSPSLSPRQEPDPKRLKMSATTTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 618 K+P P+L+ Q P R + E G D R+L KR KI + AY G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA GQVVS + + ID +++++N +LP+ IRI G KRVT FN+K CD R Y Y+LP FA +H+DR+ Sbjct: 35 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF---AHKDRD 212
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_KLULA (tRNA pseudouridine synthase 1 OS=Kluyveromyces lactis GN=PUS1 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 2.018e-26 Identity = 62/154 (40.26%), Postives = 92/154 (59.74%), Query Frame = 1 Query: 136 TTSDDERDLIPAAAGADSTTKRQLCK--RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591 T S D+ + + A AD Q + +RK+A+ YCG GY GMQ NP TIE +L EA +GA+S+ + + ++ + R+ARTDKGV A G V+S + I+ P + E++N LP QIR++ RV +F+ +K C R Y YLLP ++L Sbjct: 70 TRSKDKDESVALAVDADGNPIPQEVRLPKRKVAVMIGYCGTGYHGMQYNPPNDTIEKELFEAFVRAGAISKANSTDLKKNGFQRAARTDKGVHAGGNVISLKLIIEDPEVKEKINNELPDQIRVWDISRVNKAFDCRKMCSSRWYEYLLPTYSL 223
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_SCHPO (tRNA pseudouridine synthase 1 OS=Schizosaccharomyces pombe GN=pus1 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.495e-26 Identity = 56/125 (44.80%), Postives = 82/125 (65.60%), Query Frame = 1 Query: 214 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 588 +RK+A YCG GY GMQ NP +KTIEGDL +A +GAVS + +P++ AR+ARTDKGV A G V+S + ++ L+E++N +LP IR++ R SFN + +C+ R Y Y++P +A Sbjct: 43 KRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAARTDKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRIYEYMVPTYA 167
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_ASHGO (tRNA pseudouridine synthase 1 OS=Ashbya gossypii GN=PUS1 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.001e-25 Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 1 Query: 112 KRLKMSATTTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 588 K K T SD A S K +RK+A+ YCG GY GMQ NP +TIE +L EA +GA+S + + ++ + R+ARTDKGV A G V+S + I+ P + +++N +LP IR++G RV +F+ +K C R Y YLLP ++ Sbjct: 39 KEAKRPCTEDSD-------VALAGTSEEKEARLPKRKVAVMVGYCGTGYHGMQYNPPNRTIEAELFEAFVKAGAISRANSTDLKKNGFMRAARTDKGVHAGGNVISLKLIIEDPAIKDKINEHLPPGIRVWGISRVNKAFDCRKLCGSRWYEYLLPTYS 190
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_CANGA (tRNA pseudouridine synthase 1 OS=Candida glabrata GN=PUS1 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.478e-25 Identity = 53/126 (42.06%), Postives = 83/126 (65.87%), Query Frame = 1 Query: 214 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591 +RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ ++ R+ARTDKGV A G ++S + I+ P +++++N NLP IRI+ +RV +F+ +K C R Y YLLP ++L Sbjct: 86 KRKVAVMIGYCGTGYHGMQYNPPNPTIEAALFKAFVDAGAISKANSNDLKKNNFMRAARTDKGVHAGGNLISLKMIIEDPEIMDKINANLPEGIRIWDIERVNKAFDCRKMCSSRWYEYLLPTYSL 211
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_YEAST (tRNA pseudouridine synthase 1 OS=Saccharomyces cerevisiae GN=PUS1 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.088e-23 Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = 1 Query: 214 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591 +RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ARTDKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YLLP ++L Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYLLPTYSL 199
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS2_YEAST (tRNA pseudouridine synthase 2 OS=Saccharomyces cerevisiae GN=PUS2 PE=2 SV=3) HSP 1 Score: 98.2117 bits (243), Expect = 6.287e-20 Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 1 Query: 229 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591 + YCG GY GMQ NP KTIEG++ LF GA+SE + P++ + +ARTDKGV A+ ++S + + V +LN LP +IR++G + V FNA+ CD R Y YL+P F L Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVHAMLNLLSLKITL-REDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFIL 120 The following BLAST results are available for this feature:
BLAST of FC877980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877980 ID=FC877980; Name=FC877980; organism=Citrus clementina; type=EST; length=863bpback to top |