FC877980

Overview
NameFC877980
Unique NameFC877980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14897 contig Ccv1_Contig14897:117..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: TRUA_HUMAN (tRNA pseudouridine synthase A OS=Homo sapiens GN=PUS1 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 9.678e-29
Identity = 85/202 (42.08%), Postives = 108/202 (53.47%), Query Frame = 1
Query:   73 PSPSLSPRQ----EPDPKRLKMSATTTS------------DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 618
            P PS SPR     EP P          S            D E       +G D   +R+   +RKI +  AY G GY GMQ+N G+   KTIE DL  AL  SG + E    + R+  + R ARTDKGVSA GQVVS + + ID   ++E++N +LP+ IRI G KRVT  FN+K  CD R Y YLLP FA    +H+DR+
Sbjct:   21 PRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF---AHKDRD 216          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_YARLI (tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica GN=PUS1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.803e-28
Identity = 66/176 (37.50%), Postives = 99/176 (56.25%), Query Frame = 1
Query:   91 PRQEPDPKRLKMSATTTSDDERDLIPAAAGADSTTK----------RQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 588
            PR +   K+ KM      D +R+      G D+  K          RQ   +RK+A    YCG GY GMQ NP  KTIEGD+ +A   +GA+S+ +  +P++  + R+ARTDKGV A G V+S +  I+   +VE++N +LP Q+R++G  R   +F  +K C  R Y YL+P ++
Sbjct:   37 PRGDHQAKKQKMDRR--GDRQREQEKQGEGRDTRRKTDGPLVADEVRQ--PKRKVACMIGYCGTGYHGMQLNPPQKTIEGDIFQAFVKAGAISQNNADDPKKSAFMRAARTDKGVHAAGNVISLKMIIEDENIVEKINSHLPEQLRVWGVSRTNKAFECRKLCSSRVYEYLMPTYS 208          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: TRUA_RAT (tRNA pseudouridine synthase A OS=Rattus norvegicus GN=Pus1 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.825e-27
Identity = 77/184 (41.85%), Postives = 103/184 (55.98%), Query Frame = 1
Query:   79 PSLSPRQEPDPKRLKMSATTTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 618
            P   P  +PD K          + E        G D    R+L KR KI +  AY G GY GMQ+N G+   +TIE DL  AL  +G + E    + R+  + R ARTDKGVSA GQVVS + + ID   +++++N +LP+ IRI G KRVT  FN+K  CD R Y Y+LP FA    +H+DR+
Sbjct:   37 PPALPSHQPDRKG--RGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF---AHKDRD 212          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: TRUA_MOUSE (tRNA pseudouridine synthase A OS=Mus musculus GN=Pus1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.384e-27
Identity = 79/188 (42.02%), Postives = 107/188 (56.91%), Query Frame = 1
Query:   67 KLPSPSLSPRQEPDPKRLKMSATTTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 618
            K+P P+L+  Q   P R         + E        G D    R+L KR KI +  AY G GY GMQ+N G+   +TIE DL  AL  +G + E    + R+  + R ARTDKGVSA GQVVS + + ID   +++++N +LP+ IRI G KRVT  FN+K  CD R Y Y+LP FA    +H+DR+
Sbjct:   35 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF---AHKDRD 212          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_KLULA (tRNA pseudouridine synthase 1 OS=Kluyveromyces lactis GN=PUS1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.018e-26
Identity = 62/154 (40.26%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  136 TTSDDERDLIPAAAGADSTTKRQLCK--RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591
            T S D+ + +  A  AD     Q  +  +RK+A+   YCG GY GMQ NP   TIE +L EA   +GA+S+ +  + ++  + R+ARTDKGV A G V+S +  I+ P + E++N  LP QIR++   RV  +F+ +K C  R Y YLLP ++L
Sbjct:   70 TRSKDKDESVALAVDADGNPIPQEVRLPKRKVAVMIGYCGTGYHGMQYNPPNDTIEKELFEAFVRAGAISKANSTDLKKNGFQRAARTDKGVHAGGNVISLKLIIEDPEVKEKINNELPDQIRVWDISRVNKAFDCRKMCSSRWYEYLLPTYSL 223          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_SCHPO (tRNA pseudouridine synthase 1 OS=Schizosaccharomyces pombe GN=pus1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.495e-26
Identity = 56/125 (44.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  214 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 588
            +RK+A    YCG GY GMQ NP +KTIEGDL +A   +GAVS  +  +P++   AR+ARTDKGV A G V+S +  ++   L+E++N +LP  IR++   R   SFN + +C+ R Y Y++P +A
Sbjct:   43 KRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAARTDKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRIYEYMVPTYA 167          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_ASHGO (tRNA pseudouridine synthase 1 OS=Ashbya gossypii GN=PUS1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.001e-25
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 1
Query:  112 KRLKMSATTTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 588
            K  K   T  SD        A    S  K     +RK+A+   YCG GY GMQ NP  +TIE +L EA   +GA+S  +  + ++  + R+ARTDKGV A G V+S +  I+ P + +++N +LP  IR++G  RV  +F+ +K C  R Y YLLP ++
Sbjct:   39 KEAKRPCTEDSD-------VALAGTSEEKEARLPKRKVAVMVGYCGTGYHGMQYNPPNRTIEAELFEAFVKAGAISRANSTDLKKNGFMRAARTDKGVHAGGNVISLKLIIEDPAIKDKINEHLPPGIRVWGISRVNKAFDCRKLCGSRWYEYLLPTYS 190          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_CANGA (tRNA pseudouridine synthase 1 OS=Candida glabrata GN=PUS1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.478e-25
Identity = 53/126 (42.06%), Postives = 83/126 (65.87%), Query Frame = 1
Query:  214 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591
            +RK+A+   YCG GY GMQ NP   TIE  L +A   +GA+S+ +  + ++ ++ R+ARTDKGV A G ++S +  I+ P +++++N NLP  IRI+  +RV  +F+ +K C  R Y YLLP ++L
Sbjct:   86 KRKVAVMIGYCGTGYHGMQYNPPNPTIEAALFKAFVDAGAISKANSNDLKKNNFMRAARTDKGVHAGGNLISLKMIIEDPEIMDKINANLPEGIRIWDIERVNKAFDCRKMCSSRWYEYLLPTYSL 211          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_YEAST (tRNA pseudouridine synthase 1 OS=Saccharomyces cerevisiae GN=PUS1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.088e-23
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = 1
Query:  214 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591
            +RK+A+   YCG GY GMQ NP   TIE  L +A   +GA+S+ +  + ++  + R+ARTDKGV A G ++S +  I+ P + +++N  LP  IR++  +RV  +F+ +K C  R Y YLLP ++L
Sbjct:   74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYLLPTYSL 199          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS2_YEAST (tRNA pseudouridine synthase 2 OS=Saccharomyces cerevisiae GN=PUS2 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 6.287e-20
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  229 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591
            +   YCG GY GMQ NP  KTIEG++   LF  GA+SE +   P++  +  +ARTDKGV A+  ++S +  +     V +LN  LP +IR++G + V   FNA+  CD R Y YL+P F L
Sbjct:    1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVHAMLNLLSLKITL-REDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFIL 120          
The following BLAST results are available for this feature:
BLAST of FC877980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TRUA_HUMAN9.678e-2942.08tRNA pseudouridine synthase A OS=Homo sapiens GN=P... [more]
PUS1_YARLI4.803e-2837.50tRNA pseudouridine synthase 1 OS=Yarrowia lipolyti... [more]
TRUA_RAT1.825e-2741.85tRNA pseudouridine synthase A OS=Rattus norvegicus... [more]
TRUA_MOUSE2.384e-2742.02tRNA pseudouridine synthase A OS=Mus musculus GN=P... [more]
PUS1_KLULA2.018e-2640.26tRNA pseudouridine synthase 1 OS=Kluyveromyces lac... [more]
PUS1_SCHPO4.495e-2644.80tRNA pseudouridine synthase 1 OS=Schizosaccharomyc... [more]
PUS1_ASHGO1.001e-2538.36tRNA pseudouridine synthase 1 OS=Ashbya gossypii G... [more]
PUS1_CANGA8.478e-2542.06tRNA pseudouridine synthase 1 OS=Candida glabrata ... [more]
PUS1_YEAST2.088e-2340.48tRNA pseudouridine synthase 1 OS=Saccharomyces cer... [more]
PUS2_YEAST6.287e-2042.98tRNA pseudouridine synthase 2 OS=Saccharomyces cer... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877980 ID=FC877980; Name=FC877980; organism=Citrus clementina; type=EST; length=863bp
CTCGAACACATCGAAGTACTCTCACTCTGCTAACTGAAAATGGAAAACGC
AGAAACCAACACCGAAAAATTGCCATCCCCATCACTGTCGCCACGACAAG
AACCAGATCCCAAAAGGCTCAAAATGTCCGCAACCACCACCTCCGACGAC
GAACGCGACCTCATCCCCGCCGCCGCAGGCGCCGATTCTACCACTAAAAG
ACAGCTATGCAAGCGCCGCAAGATAGCCATATTCTTCGCATACTGCGGCG
TCGGCTACCAAGGCATGCAAAAGAACCCAGGCGCCAAAACCATCGAAGGC
GATCTCGAAGAAGCCCTCTTCCACTCCGGTGCTGTCTCTGAACGGGACCG
TGGCAACCCCAGGCGATATGACTGGGCCCGCTCGGCCCGAACCGATAAGG
GTGTAAGCGCCGTGGGCCAGGTTGTATCGGGTCGGTTTTGTATCGACCCG
CCCGGTCTTGTTGAAAGACTTAATTATAATCTCCCCACTCAGATTCGGAT
TTTTGGTTACAAGCGTGTGACGGCGTCGTTTAACGCCAAGAAGTTTTGCG
ATCAGAGGAGGTATGTGTATCTTCTTCCTGTATTTGCTCTTGATTCATCT
TCTCATAGGGATAGAGAGAGTGTTATGGCTAGTTTAGGGTCTGGTAATGA
ACTTGTTAAGTGTTTAGAGTGTTCTGAAAGAGGCCGTANAGTAATTGGTG
TTATGGGTAAGCGTACTTATCAGTTAGGCCTTCCGTCTAACGATGAGAAT
GCAAGTTTGAACTCTCAAGTTAAAGTTGATACTGTAGTCTCCACTTGCAA
TGGTGATAGGCATAATACAAATCTAGAATCTGTAGAGAGCAATAAAACAA
TTTCAGAATCCGC
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