FC877984

Overview
NameFC877984
Unique NameFC877984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3554 contig Ccv1_Contig3554:256..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877984 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.277e-34
Identity = 101/295 (34.24%), Postives = 139/295 (47.12%), Query Frame = 2
Query:   23 LRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVXXXXXXXXXXXTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPTDVFPNFLFGCGQNNHXXXXXXXXXXXXXR-DPISLVSQTATKYKKLFSYCLPS-SASSTGHLTFGPGASKSVQFTPLSSISGGS---SFYGLEMIGISVGGQKLSIAASVFT-----TAGTIIDSGTVITRLPPDAYTPLRTAF 877
            +++ + R++SI++ L  +SG    +   D              G Y++ V IGTP    S I DTGSDL WTQCEPC + C+ Q  P F+P               C  L S T     C ++ C Y   YGD S + G+   ET T   + V PN  FGCG++N                 P+SL SQ        FSYC+ S  +SS   L  G  AS   + +P +++   S   ++Y + + GI+VGG  L I +S F      T G IIDSGT +T LP DAY  +  AF
Sbjct:   65 IKRGERRMRSINAMLQSSSGIETPVYAGD--------------GEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQ-CFSQPTPIFNPQDSSSFSTLPCESQYCQDLPSET-----CNNNECQYTYGYGDGSTTQGYMATETFTFETSSV-PNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGVGQ---FSYCMTSYGSSSPSTLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAF 335          
BLAST of FC877984 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.561e-32
Identity = 93/256 (36.33%), Postives = 128/256 (50.00%), Query Frame = 2
Query:  146 GAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVXXXXXXXXXXXTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPTDVFPNFLFGCGQNNH-XXXXXXXXXXXXXRDPISLVSQ-TATKYKKLFSYCL-PSSASSTGHLTFGPGASKSVQFTPLSSISGGS---SFYGLEMIGISVGGQKLSIAASVFT------TAGTIIDSGTVITRLPPDAYTPLRTAF 877
            G G Y++ + IGTP +  S I DTGSDL WTQC+PC + C+ Q  P F+P              +C +L     +SP C+++ C Y   YGD S + G  G ETLT     + PN  FGCG+NN               R P+SL SQ   TK    FSYC+ P  +S+  +L  G  A+     +P +++   S   +FY + + G+SVG  +L I  S F       T G IIDSGT +T    +AY  +R  F
Sbjct:   91 GDGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQ-CFNQSTPIFNPQGSSSFSTLPCSSQLCQAL-----SSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSI-PNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVTK----FSYCMTPIGSSTPSNLLLGSLANSVTAGSPNTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEF 335          
BLAST of FC877984 vs. ExPASy Swiss-Prot
Match: ASPL2_ARATH (Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.328e-15
Identity = 69/262 (26.34%), Postives = 102/262 (38.93%), Query Frame = 2
Query:  131 DGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPC----VKYCYEQKEPKFDPTVXXXXXXXXXXXTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPT-------DVFPNFLFGCGQNNH----XXXXXXXXXXXXXRDPISLVSQTAT--KYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 865
            D  V   G Y   + +G+P K+  +  DTGSD+ W  C+PC     K     +   FD                C+ +  +    PA     C Y I Y D S S G F ++ LTL           +    +FGCG +                   +   S++SQ A     K++FS+CL  +    G    G   S  V+ TP+         Y + ++G+ V G  L +  S+    GTI+DSGT +   P   Y  L
Sbjct:   65 DSRVDSVGLYFTKIKLGSPPKEYHVQVDTGSDILWINCKPCPKCPTKTNLNFRLSLFDMNASSTSKKVGCDDDFCSFISQSDSCQPALG---CSYHIVYADESTSDGKFIRDMLTLEQVTGDLKTGPLGQEVVFGCGSDQSGQLGNGDSAVDGVMGFGQSNTSVLSQLAATGDAKRVFSHCL-DNVKGGGIFAVGVVDSPKVKTTPMVP---NQMHYNVMLMGMDVDGTSLDLPRSIVRNGGTIVDSGTTLAYFPKVLYDSL 319          
The following BLAST results are available for this feature:
BLAST of FC877984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NEP2_NEPGR1.277e-3434.24Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR1.561e-3236.33Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
ASPL2_ARATH1.328e-1526.34Aspartic proteinase-like protein 2 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA73AG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877984 ID=FC877984; Name=FC877984; organism=Citrus clementina; type=EST; length=904bp
ATCAGTATCACATGCAGAGATCCTTCGGCAAGACCAGTCTAGAGTTAAAT
CAATTCACTCAAGACTCTCTAAGAACTCAGGCAGCCTTGATGAGATCAGG
CAGTCGGACGACGCCACGCTCCCCGCCAAGGACGGTAGCGTCGTGGGTGC
CGGCAATTACATTGTCACGGTGGGTATTGGTACCCCCAAGAAAGATTTAT
CCCTCATTTTTGACACCGGAAGTGACCTCACATGGACTCAATGTGAGCCT
TGCGTCAAATACTGCTATGAACAAAAGGAGCCAAAATTTGACCCCACCGT
GTCCCAATCGTACAGCAACGTGTCTTGCTCGTCGACAATCTGCACTTCGC
TCCAATCAGCCACAGGTAACTCACCAGCTTGTGCATCATCCACATGCCTC
TATGGGATTCAATACGGAGACTCATCATTCTCCATTGGCTTCTTCGGGAA
AGAAACCCTAACCCTGACACCCACGGACGTTTTCCCTAACTTCCTCTTCG
GCTGCGGCCAAAACAACCACGGGCTCTTCGGCGGCGCTGCCGGTTTAATG
GGTCTCGGCCGTGACCCAATCTCACTAGTTTCCCAAACAGCCACAAAATA
CAAGAAACTCTTCTCATATTGCCTCCCTTCGTCCGCCAGCTCAACCGGTC
ACCTCACTTTCGGCCCCGGCGCATCAAAGTCCGTTCAGTTCACCCCACTC
TCCTCAATTTCTGGAGGATCATCATTCTACGGCCTTGAAATGATTGGAAT
CAGCGTTGGCGGCCAAAAACTATCCATTGCCGCGTCAGTTTTCACTACAG
CCGGTACAATTATAGACTCCGGAACTGTCATCACACGTCTGCCTCCGGAT
GCATACACCCCTCTGCGGACAGCATTCCGTCAGTTTATGTCCAAGTATCC
GACT
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