FC877985

Overview
NameFC877985
Unique NameFC877985
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length883
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2872 contig Ccv1_Contig2872:1..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877985 vs. ExPASy Swiss-Prot
Match: CRNA_EMENI (Nitrate transporter OS=Emericella nidulans GN=crnA PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.931e-28
Identity = 70/211 (33.18%), Postives = 113/211 (53.55%), Query Frame = 2
Query:    2 FFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIF-TAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKE---FKKTKTESREEKFVHVLFNGLKNYR 619
            F S ++ PPL+ + IR DL+++ T +  + + + L ++  RL  GP+CD  GPR+    L L+ +     A LV+SPQ  I +RF +G     FV  Q W +  F   +VG AN ++AG  N G G++  +MP IF + I    +  H AWR+A+IVP       A+ +L    D P+G + E   + K  T++  +  +  L +G ++ R
Sbjct:   47 FLSWYAFPPLLTVTIRDDLDMSQTQIANSNIIALLATLLVRLICGPLCDRFGPRLVFIGLLLVGSIPTAMAGLVTSPQGLIALRFFIGILGGTFVPCQVWCTGFFDKSIVGTANSLAAGLGNAGGGITYFVMPAIFDSLIRDQGLPAHKAWRVAYIVPFILIVAAALGMLFTCDDTPTGKWSERHIWMKEDTQTASKGNIVDLSSGAQSSR 257          
BLAST of FC877985 vs. ExPASy Swiss-Prot
Match: NART_STACT (Probable nitrate transporter narT OS=Staphylococcus carnosus (strain TM300) GN=narT PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 72/264 (27.27%), Postives = 113/264 (42.80%), Query Frame = 2
Query:   20 IPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLLGPR-VASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDEM 805
            I PL+P+I  D+ +T + +     +   LGS+  R+  G + +++G + V  ++  ++  PI L  S   S    +L  F +G   A F      +   F    VGLANG+  G  N+G  VS  L P I  AI     G  +  RL  IV + F  +   +          G+ KE K       + K +      LK+ R + L   Y   FG  +     + +Y  D + +    AG  A  F     F RP+GG+I D++
Sbjct:   27 IAPLMPMISQDIKITSSQISIVLAIPVILGSVL-RIPFGYLTNIIGAKWVFFSSFIILLFPIFL-LSQAQSVNMLMLAGFFLGVGGAVFSVGVTSIPKYFPKDKVGLANGIY-GMGNLGTAVSSFLAPPIAGAI-----GWQSTVRLYLIVMAVFAIVMFFL----------GDAKEPKVKIPLVAQTKDL------LKDLRTYYLSFWYFITFGSFVAFGIFLPKYLVDHYELTTVDAGIRAGIFIAIATFLRPLGGIIGDKI 266          
BLAST of FC877985 vs. ExPASy Swiss-Prot
Match: NART_STAAW (Probable nitrate transporter narT OS=Staphylococcus aureus (strain MW2) GN=narT PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 68/270 (25.19%), Postives = 114/270 (42.22%), Query Frame = 2
Query:    2 FFSTFSIPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEK--FVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDE 802
            F +   I PL+P I+ D+N+T+  +     +   LGS+  R+  G + +++G +    T  ++    +   S   +P   +   F +G   A F      +   F    VGLANG+  G  N+G  VS  L P I   I     G  T  R   I+ + F    A+++ I+G               T+ R+ K   +  +    KNY+ + L   Y   FG  +     +  Y  + FG++   AG  +  F     F RP+GG++ D+
Sbjct:   21 FMAWSIIAPLMPFIKQDVNVTEGQISIILAIPVILGSVL-RVPFGYLTNIVGAKWVFFTSFIVLLFPIFFLSQAQTPGMLMASGFFLGVGGAIFSVGVTSVPKYFPKEKVGLANGIY-GMGNIGTAVSSFLAPPIAGII-----GWQTTVRSYLIIIALF----ALIMFIFGD--------------TQERKIKVPLMAQMKTLSKNYKLYYLSYWYFITFGAFVAFGIFLPNYLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGDK 265          
BLAST of FC877985 vs. ExPASy Swiss-Prot
Match: NART_STAAT (Probable nitrate transporter narT OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=narT PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 68/270 (25.19%), Postives = 114/270 (42.22%), Query Frame = 2
Query:    2 FFSTFSIPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEK--FVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDE 802
            F +   I PL+P I+ D+N+T+  +     +   LGS+  R+  G + +++G +    T  ++    +   S   +P   +   F +G   A F      +   F    VGLANG+  G  N+G  VS  L P I   I     G  T  R   I+ + F    A+++ I+G               T+ R+ K   +  +    KNY+ + L   Y   FG  +     +  Y  + FG++   AG  +  F     F RP+GG++ D+
Sbjct:   21 FMAWSIIAPLMPFIKQDVNVTEGQISIILAIPVILGSVL-RVPFGYLTNIVGAKWVFFTSFIVLLFPIFFLSQAQTPGMLMASGFFLGVGGAIFSVGVTSVPKYFPKEKVGLANGIY-GMGNIGTAVSSFLAPPIAGII-----GWQTTVRSYLIIIALF----ALIMFIFGD--------------TQERKIKVPLMAQMKTLSKNYKLYYLSYWYFITFGAFVAFGIFLPNYLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGDK 265          
BLAST of FC877985 vs. ExPASy Swiss-Prot
Match: NART_STAAS (Probable nitrate transporter narT OS=Staphylococcus aureus (strain MSSA476) GN=narT PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 68/270 (25.19%), Postives = 114/270 (42.22%), Query Frame = 2
Query:    2 FFSTFSIPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEK--FVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDE 802
            F +   I PL+P I+ D+N+T+  +     +   LGS+  R+  G + +++G +    T  ++    +   S   +P   +   F +G   A F      +   F    VGLANG+  G  N+G  VS  L P I   I     G  T  R   I+ + F    A+++ I+G               T+ R+ K   +  +    KNY+ + L   Y   FG  +     +  Y  + FG++   AG  +  F     F RP+GG++ D+
Sbjct:   21 FMAWSIIAPLMPFIKQDVNVTEGQISIILAIPVILGSVL-RVPFGYLTNIVGAKWVFFTSFIVLLFPIFFLSQAQTPGMLMASGFFLGVGGAIFSVGVTSVPKYFPKEKVGLANGIY-GMGNIGTAVSSFLAPPIAGII-----GWQTTVRSYLIIIALF----ALIMFIFGD--------------TQERKIKVPLMAQMKTLSKNYKLYYLSYWYFITFGAFVAFGIFLPNYLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGDK 265          
BLAST of FC877985 vs. ExPASy Swiss-Prot
Match: NART_STAAN (Probable nitrate transporter narT OS=Staphylococcus aureus (strain N315) GN=narT PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 68/270 (25.19%), Postives = 114/270 (42.22%), Query Frame = 2
Query:    2 FFSTFSIPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEK--FVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDE 802
            F +   I PL+P I+ D+N+T+  +     +   LGS+  R+  G + +++G +    T  ++    +   S   +P   +   F +G   A F      +   F    VGLANG+  G  N+G  VS  L P I   I     G  T  R   I+ + F    A+++ I+G               T+ R+ K   +  +    KNY+ + L   Y   FG  +     +  Y  + FG++   AG  +  F     F RP+GG++ D+
Sbjct:   21 FMAWSIIAPLMPFIKQDVNVTEGQISIILAIPVILGSVL-RVPFGYLTNIVGAKWVFFTSFIVLLFPIFFLSQAQTPGMLMASGFFLGVGGAIFSVGVTSVPKYFPKEKVGLANGIY-GMGNIGTAVSSFLAPPIAGII-----GWQTTVRSYLIIIALF----ALIMFIFGD--------------TQERKIKVPLMAQMKTLSKNYKLYYLSYWYFITFGAFVAFGIFLPNYLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGDK 265          
BLAST of FC877985 vs. ExPASy Swiss-Prot
Match: NART_STAAM (Probable nitrate transporter narT OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=narT PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 68/270 (25.19%), Postives = 114/270 (42.22%), Query Frame = 2
Query:    2 FFSTFSIPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEK--FVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDE 802
            F +   I PL+P I+ D+N+T+  +     +   LGS+  R+  G + +++G +    T  ++    +   S   +P   +   F +G   A F      +   F    VGLANG+  G  N+G  VS  L P I   I     G  T  R   I+ + F    A+++ I+G               T+ R+ K   +  +    KNY+ + L   Y   FG  +     +  Y  + FG++   AG  +  F     F RP+GG++ D+
Sbjct:   21 FMAWSIIAPLMPFIKQDVNVTEGQISIILAIPVILGSVL-RVPFGYLTNIVGAKWVFFTSFIVLLFPIFFLSQAQTPGMLMASGFFLGVGGAIFSVGVTSVPKYFPKEKVGLANGIY-GMGNIGTAVSSFLAPPIAGII-----GWQTTVRSYLIIIALF----ALIMFIFGD--------------TQERKIKVPLMAQMKTLSKNYKLYYLSYWYFITFGAFVAFGIFLPNYLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGDK 265          
BLAST of FC877985 vs. ExPASy Swiss-Prot
Match: NART_STAAE (Probable nitrate transporter narT OS=Staphylococcus aureus (strain Newman) GN=narT PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 68/270 (25.19%), Postives = 114/270 (42.22%), Query Frame = 2
Query:    2 FFSTFSIPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEK--FVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDE 802
            F +   I PL+P I+ D+N+T+  +     +   LGS+  R+  G + +++G +    T  ++    +   S   +P   +   F +G   A F      +   F    VGLANG+  G  N+G  VS  L P I   I     G  T  R   I+ + F    A+++ I+G               T+ R+ K   +  +    KNY+ + L   Y   FG  +     +  Y  + FG++   AG  +  F     F RP+GG++ D+
Sbjct:   21 FMAWSIIAPLMPFIKQDVNVTEGQISIILAIPVILGSVL-RVPFGYLTNIVGAKWVFFTSFIVLLFPIFFLSQAQTPGMLMASGFFLGVGGAIFSVGVTSVPKYFPKEKVGLANGIY-GMGNIGTAVSSFLAPPIAGII-----GWQTTVRSYLIIIALF----ALIMFIFGD--------------TQERKIKVPLMAQMKTLSKNYKLYYLSYWYFITFGAFVAFGIFLPNYLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGDK 265          
BLAST of FC877985 vs. ExPASy Swiss-Prot
Match: NART_STAAC (Probable nitrate transporter narT OS=Staphylococcus aureus (strain COL) GN=narT PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 68/270 (25.19%), Postives = 114/270 (42.22%), Query Frame = 2
Query:    2 FFSTFSIPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEK--FVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDE 802
            F +   I PL+P I+ D+N+T+  +     +   LGS+  R+  G + +++G +    T  ++    +   S   +P   +   F +G   A F      +   F    VGLANG+  G  N+G  VS  L P I   I     G  T  R   I+ + F    A+++ I+G               T+ R+ K   +  +    KNY+ + L   Y   FG  +     +  Y  + FG++   AG  +  F     F RP+GG++ D+
Sbjct:   21 FMAWSIIAPLMPFIKQDVNVTEGQISIILAIPVILGSVL-RVPFGYLTNIVGAKWVFFTSFIVLLFPIFFLSQAQTPGMLMASGFFLGVGGAIFSVGVTSVPKYFPKEKVGLANGIY-GMGNIGTAVSSFLAPPIAGII-----GWQTTVRSYLIIIALF----ALIMFIFGD--------------TQERKIKVPLMAQMKTLSKNYKLYYLSYWYFITFGAFVAFGIFLPNYLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGDK 265          
BLAST of FC877985 vs. ExPASy Swiss-Prot
Match: NART_STAAB (Probable nitrate transporter narT OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=narT PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 68/270 (25.19%), Postives = 114/270 (42.22%), Query Frame = 2
Query:    2 FFSTFSIPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEK--FVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDE 802
            F +   I PL+P I+ D+N+T+  +     +   LGS+  R+  G + +++G +    T  ++    +   S   +P   +   F +G   A F      +   F    VGLANG+  G  N+G  VS  L P I   I     G  T  R   I+ + F    A+++ I+G               T+ R+ K   +  +    KNY+ + L   Y   FG  +     +  Y  + FG++   AG  +  F     F RP+GG++ D+
Sbjct:   21 FMAWSIIAPLMPFIKQDVNVTEGQISIILAIPVILGSVL-RVPFGYLTNIVGAKWVFFTSFIVLLFPIFFLSQAQTPGMLMASGFFLGVGGAIFSVGVTSVPKYFPKEKVGLANGIY-GMGNIGTAVSSFLAPPIAGII-----GWQTTVRSYLIIIALF----ALIMFIFGD--------------TQERKIKVPLMAQMKTLSKNYKLYYLSYWYFITFGAFVAFGIFLPNYLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGDK 265          
The following BLAST results are available for this feature:
BLAST of FC877985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CRNA_EMENI2.931e-2833.18Nitrate transporter OS=Emericella nidulans GN=crnA... [more]
NART_STACT5.553e-1127.27Probable nitrate transporter narT OS=Staphylococcu... [more]
NART_STAAW7.253e-1125.19Probable nitrate transporter narT OS=Staphylococcu... [more]
NART_STAAT7.253e-1125.19Probable nitrate transporter narT OS=Staphylococcu... [more]
NART_STAAS7.253e-1125.19Probable nitrate transporter narT OS=Staphylococcu... [more]
NART_STAAN7.253e-1125.19Probable nitrate transporter narT OS=Staphylococcu... [more]
NART_STAAM7.253e-1125.19Probable nitrate transporter narT OS=Staphylococcu... [more]
NART_STAAE7.253e-1125.19Probable nitrate transporter narT OS=Staphylococcu... [more]
NART_STAAC7.253e-1125.19Probable nitrate transporter narT OS=Staphylococcu... [more]
NART_STAAB7.253e-1125.19Probable nitrate transporter narT OS=Staphylococcu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA18DF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877985 ID=FC877985; Name=FC877985; organism=Citrus clementina; type=EST; length=883bp
CTTCTTCTCCACATTCTCCATCCCTCCTCTCATCCCCATCATCCGCCACG
ACCTCAACCTCACCGACACCGACGTCGGCACCGCCGGCATGGCCTCCTTC
CTGGGCTCCATCTTCTCCCGCCTCGCCATGGGCCCCGTATGCGACCTCCT
GGGCCCACGAGTGGCCTCCGCCACCCTCTCCCTCATCACAGCCCCCATCG
TCTTATCCGCCTCCCTAGTCTCCTCCCCGCAGTCCTTCATCCTCGTACGC
TTCCTCGTAGGGTTTTGCTTGGCCAACTTCGTGGCCAATCAGTTCTGGAT
GAGCTCCATGTTCTCCGGCTGCGTCGTCGGCCTCGCCAACGGCGTCTCCG
CCGGCTGGGCCAACATGGGCGCCGGCGTGTCCCAGCTACTAATGCCGTTA
ATCTTCACGGCTATCACCAGCCTCAACGTGGGAACACACACTGCATGGCG
CTTAGCTTTTATAGTTCCGTCAACATTCCAAGCTTTAACAGCCATTATGG
TTTTGATCTACGGCCAAGACTTGCCTTCCGGGAACTACAAGGAGTTCAAG
AAAACAAAAACTGAATCCAGAGAGGAGAAGTTTGTGCACGTTCTTTTCAA
TGGCCTGAAGAATTACAGAGGATGGATTCTGGGTTTAACGTACGGGTTCT
GTTTTGGGGTGGAGTTGACGACTGATAACATAATAGCGCAGTATTTTTAC
GATAGATTTGGTGTGAATCTTCAGGTGGCGGGGACGATAGCGGCGAGTTT
TGGGATGGCTAATTTGTTCTCGAGGCCGATGGGCGGGGTGATTTCCGATG
AGATGGGGCGGCGGTTTGGGATTAGAGGGAGGCTGTGGGGGTTGTGGGCC
GTGCAGACCGCGGCCGGGTTGCTGTGTGTGTTG
back to top