FC877987
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18 Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 3 Query: 474 IEAIDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 I ID IYGSDEFRMYAYKI+RC RTRSHDWT+CPYAHRGEKA RRD Sbjct: 40 IPNIDDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRD 87
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H2_ARATH (Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14 Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 3 Query: 498 YGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 Y SD FRM+ +KIRRCTR+RSHDWTDCP+AH GEKA+RRD Sbjct: 78 YASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRD 117
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H61_ARATH (Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis thaliana GN=At5g44260 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13 Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 3 Query: 498 YGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 Y D FRMY +KIRRCTR+RSHDWTDCP++H GEKA+RRD Sbjct: 56 YAGDHFRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRD 95
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13 Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 3 Query: 465 LNPIEAIDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 L P ID Y D FRMY +K+RRC R RSHDWT+CPYAH GEKA+RRD Sbjct: 66 LGPDSPIDA--YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRD 114
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13 Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3 Query: 492 EIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 + Y DEFRMY +K+RRC R RSHDWT+CP+AH GEKA+RRD Sbjct: 71 DAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRD 112
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13 Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3 Query: 492 EIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 + Y DEFRMY +K+RRC R RSHDWT+CP+AH GEKA+RRD Sbjct: 70 DAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRD 111
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12 Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 3 Query: 468 NPIEAIDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 +PI+A Y D FRMY +K+RRC R RSHDWT+CPYAH GEKA+RRD Sbjct: 69 SPIDA-----YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRD 113
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 3 Query: 498 YGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 + SDEFR+Y +KIRRC R RSHDWT+CP+AH GEKA+RRD Sbjct: 86 FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRD 125
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12 Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 3 Query: 483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 I +YG+DEFRMYA+KI+ C+R SHDWT+CP+ H GE A+RRD Sbjct: 200 IKNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRD 244
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12 Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 3 Query: 483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 I IY SDEFRMY++KIR C+R SHDWT+CP+ H GE A+RRD Sbjct: 272 IKNSIYASDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRD 316 The following BLAST results are available for this feature:
BLAST of FC877987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877987 ID=FC877987; Name=FC877987; organism=Citrus clementina; type=EST; length=619bpback to top |