FC877987

Overview
NameFC877987
Unique NameFC877987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6985 contig Ccv1_Contig6985:1..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 3
Query:  474 IEAIDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            I  ID  IYGSDEFRMYAYKI+RC RTRSHDWT+CPYAHRGEKA RRD
Sbjct:   40 IPNIDDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRD 87          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H2_ARATH (Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:  498 YGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            Y SD FRM+ +KIRRCTR+RSHDWTDCP+AH GEKA+RRD
Sbjct:   78 YASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRD 117          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H61_ARATH (Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis thaliana GN=At5g44260 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:  498 YGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            Y  D FRMY +KIRRCTR+RSHDWTDCP++H GEKA+RRD
Sbjct:   56 YAGDHFRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRD 95          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 3
Query:  465 LNPIEAIDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            L P   ID   Y  D FRMY +K+RRC R RSHDWT+CPYAH GEKA+RRD
Sbjct:   66 LGPDSPIDA--YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRD 114          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3
Query:  492 EIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            + Y  DEFRMY +K+RRC R RSHDWT+CP+AH GEKA+RRD
Sbjct:   71 DAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRD 112          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3
Query:  492 EIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            + Y  DEFRMY +K+RRC R RSHDWT+CP+AH GEKA+RRD
Sbjct:   70 DAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRD 111          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:  468 NPIEAIDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            +PI+A     Y  D FRMY +K+RRC R RSHDWT+CPYAH GEKA+RRD
Sbjct:   69 SPIDA-----YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRD 113          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:  498 YGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            + SDEFR+Y +KIRRC R RSHDWT+CP+AH GEKA+RRD
Sbjct:   86 FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRD 125          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 3
Query:  483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            I   +YG+DEFRMYA+KI+ C+R  SHDWT+CP+ H GE A+RRD
Sbjct:  200 IKNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRD 244          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 3
Query:  483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            I   IY SDEFRMY++KIR C+R  SHDWT+CP+ H GE A+RRD
Sbjct:  272 IKNSIYASDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRD 316          
The following BLAST results are available for this feature:
BLAST of FC877987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
C3H54_ARATH4.251e-1883.33Zinc finger CCCH domain-containing protein 54 OS=A... [more]
C3H2_ARATH8.296e-1477.50Zinc finger CCCH domain-containing protein 2 OS=Ar... [more]
C3H61_ARATH1.848e-1375.00Zinc finger CCCH domain-containing protein 61 OS=A... [more]
C3H49_ARATH5.377e-1364.71Zinc finger CCCH domain-containing protein 49 OS=A... [more]
C3H35_ORYSJ7.023e-1369.05Zinc finger CCCH domain-containing protein 35 OS=O... [more]
C3H2_ORYSJ7.023e-1369.05Zinc finger CCCH domain-containing protein 2 OS=Or... [more]
C3H20_ARATH1.198e-1264.00Zinc finger CCCH domain-containing protein 20 OS=A... [more]
C3H23_ARATH1.565e-1272.50Zinc finger CCCH domain-containing protein 23 OS=A... [more]
C3H66_ARATH3.485e-1262.22Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H24_ORYSJ3.485e-1264.44Zinc finger CCCH domain-containing protein 24 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877987 ID=FC877987; Name=FC877987; organism=Citrus clementina; type=EST; length=619bp
CTTCCTTTTGAAAACTCCCCTTAATTCATCTCTTCATTTCTCTTCATAAA
AAATGGATAGTTTCTCTCTTCCTTCATTTTCATTTATATATTTCCTTCCC
CAATTTTCATAATCTCCCGTAATTTTCTAGCCCTTTCTTGTTTGTTTCAG
CTTAAAAATATCAATCTTTGGCTCTCAAAATTTTCTTATTTATTTTTCTA
CATAATTTGCACATAATCCCTCTTCTCATGTATCAATTTTGAAATTTATC
AGGTCCTTTTCAAGATTCCAATTCATGCATAATTATTAACATTAAAATCT
TTCAGTTTTTGAAACCGTTGAAGCTTTTGTAAGTGGGTGCAATTTGTACA
TATCTATAAAAAAAAAATAGAAAAGACAAAAATATTCACTTTGAAAAAAA
AATGTTGAAAGACAGCAACAATGGTGTCCACGATTTCGCTGAGCATCCTT
ACTGCGACATAAATCTAAACCCTATTGAGGCAATCGACGGGGAAATCTAT
GGCTCTGATGAGTTCCGCATGTACGCGTACAAGATCAGACGGTGCACGAG
AACCCGGAGCCACGACTGGACGGACTGCCCCTACGCGCACCGTGGGGAGA
AGGCTCAGCGTCGGGACCC
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