FC877988

Overview
NameFC877988
Unique NameFC877988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length941
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10480 contig Ccv1_Contig10480:1..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877988 vs. ExPASy Swiss-Prot
Match: GCN5_ARATH (Histone acetyltransferase GCN5 OS=Arabidopsis thaliana GN=HAG1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.768e-61
Identity = 124/258 (48.06%), Postives = 146/258 (56.59%), Query Frame = 1
Query:  103 AHSAHLTAPNXXXXXXXXXXXXXXXXXXXXXIHKRKLXXXXXXXX--SEDHAP--HAFPPS-FSADTRDGALTSNDDLESISARGAXXXXXXXXXXXXXXXXXXXXXXXXXX----MRTFTAARLENNNSV-GSARNTKLKTENSTVKIENSDGGKEXXXXXXXXXXXXXXXXXXVLGTAGKEDTVKIFTENIQASGAYSXXXXXXXXXXXXGNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDR 846
            +HS+HL A N                     +HKRKL          SEDHAP   +FPPS FSADTRDGALTSND+LESISARGA                              +RTFTAARL++++ V GS+RNTKLKTE+STVK+E+SDGGK+                  + G   K+++VK+  EN Q SGAY             G LKFVC SND IDEHM+ LIGLKNIFARQLPNMPKEYIVRL+MDR
Sbjct:    3 SHSSHLNAANRSRSSQTPSPSHSASASVTSSLHKRKLAATTAANAAASEDHAPPSSSFPPSSFSADTRDGALTSNDELESISARGADTDSDPDESEDIVVDDDEDEFAPEQDQDSSIRTFTAARLDSSSGVNGSSRNTKLKTESSTVKLESSDGGKDGGSSVVGTGVSGTVGGSSISGLVPKDESVKVLAENFQTSGAYIAREEALKREEQAGRLKFVCYSNDSIDEHMMCLIGLKNIFARQLPNMPKEYIVRLLMDR 260          

HSP 2 Score: 56.6102 bits (135), Expect = 1.768e-61
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 3
Query:  846 KHKSVMVIRGNVVVGGITYRPYVSQKFGGDSF 941
            KHKSVMV+RGN+VVGGITYRPY SQKFG  +F
Sbjct:  261 KHKSVMVLRGNLVVGGITYRPYHSQKFGEIAF 292          
BLAST of FC877988 vs. ExPASy Swiss-Prot
Match: GCN5_ORYSJ (Histone acetyltransferase GCN5 OS=Oryza sativa subsp. japonica GN=GCN5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.701e-26
Identity = 72/172 (41.86%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  424 MRTFTAARLENNNSVGSARNTKLKTENSTVKIENSDGGKEXXXXXXXXXXXXXXXXXXVLGTAGKEDTVKIFTENIQASGAYSXXXXXXXXXXXXGNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSTNRLWLSEEMWLLVASHIAHMSVKSLGEIA 939
            + TFTAARL+      S R  K   E+STV    +                            GKED   +FT+NIQ SGAYS            G LKF+C SNDG+DEHM+WL+GLKNIFARQLPNMPKEYIVRLVMDR+   + +     ++        + +  GEIA
Sbjct:   75 LHTFTAARLDGAPPSSSGRPPK--PESSTVSAAAAAAAAAAAPKPDSASAAAGD---------GKEDPKGLFTDNIQTSGAYSAREEGLKREEEAGRLKFLCYSNDGVDEHMIWLVGLKNIFARQLPNMPKEYIVRLVMDRTHKSMMVIRNNIVVGGITYRPYTSQKFGEIA 235          
BLAST of FC877988 vs. ExPASy Swiss-Prot
Match: GCN5_YEAST (Histone acetyltransferase GCN5 OS=Saccharomyces cerevisiae GN=GCN5 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.964e-11
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  709 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRS 849
            G ++F  ++ND   E+M+ L GLKNIF +QLP MPKEYI RLV DRS
Sbjct:   98 GKIEFRVVNNDNTKENMMVLTGLKNIFQKQLPKMPKEYIARLVYDRS 144          

HSP 2 Score: 29.261 bits (64), Expect = 2.964e-11
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  849 HKSVMVIRGNV-VVGGITYRPYVSQKF 926
            H S+ VIR  + VVGGITYRP+  ++F
Sbjct:  145 HLSMAVIRKPLTVVGGITYRPFDKREF 171          
BLAST of FC877988 vs. ExPASy Swiss-Prot
Match: GCN5_CANGA (Histone acetyltransferase GCN5 OS=Candida glabrata GN=GCN5 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.823e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  709 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRS 849
            G ++F  +SND   E+M+ L GLKNIF +QLP MPKEYI RLV DRS
Sbjct:  205 GKIEFRVVSNDNTRENMMVLTGLKNIFQKQLPKMPKEYIARLVYDRS 251          

HSP 2 Score: 28.1054 bits (61), Expect = 3.823e-11
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  849 HKSVMVIRGNV-VVGGITYRPYVSQKF 926
            H S+ VIR  + VVGGITY+P+  ++F
Sbjct:  252 HLSMAVIRKPLTVVGGITYKPFNKRQF 278          
BLAST of FC877988 vs. ExPASy Swiss-Prot
Match: GCN5_KLULA (Histone acetyltransferase GCN5 OS=Kluyveromyces lactis GN=GCN5 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.970e-11
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  709 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRS 849
            G ++F  ++ND   E+M+ L GLKNIF +QLP MPKEYI RLV DRS
Sbjct:  175 GKIEFRVVNNDNSKENMMVLTGLKNIFQKQLPKMPKEYIARLVYDRS 221          

HSP 2 Score: 28.8758 bits (63), Expect = 4.970e-11
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  849 HKSVMVIRGNV-VVGGITYRPYVSQKF 926
            H S+ V+R  + VVGGITYRP+  ++F
Sbjct:  222 HLSMAVVRKPLTVVGGITYRPFDKREF 248          
BLAST of FC877988 vs. ExPASy Swiss-Prot
Match: GCN5_ASHGO (Histone acetyltransferase GCN5 OS=Ashbya gossypii GN=GCN5 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 6.476e-11
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  709 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRS 849
            G ++F  ++ND   E+M+ L GLKNIF +QLP MPKEYI RLV DRS
Sbjct:  111 GKIEFRVVNNDNTRENMMVLTGLKNIFQKQLPKMPKEYIARLVYDRS 157          

HSP 2 Score: 28.4906 bits (62), Expect = 6.476e-11
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  849 HKSVMVIRGNV-VVGGITYRPYVSQKF 926
            H S+ VIR  + VVGGITYRP+   +F
Sbjct:  158 HLSMAVIRKPLTVVGGITYRPFEKGEF 184          
The following BLAST results are available for this feature:
BLAST of FC877988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GCN5_ARATH1.768e-6148.06Histone acetyltransferase GCN5 OS=Arabidopsis thal... [more]
GCN5_ORYSJ6.701e-2641.86Histone acetyltransferase GCN5 OS=Oryza sativa sub... [more]
GCN5_YEAST2.964e-1159.57Histone acetyltransferase GCN5 OS=Saccharomyces ce... [more]
GCN5_CANGA3.823e-1161.70Histone acetyltransferase GCN5 OS=Candida glabrata... [more]
GCN5_KLULA4.970e-1159.57Histone acetyltransferase GCN5 OS=Kluyveromyces la... [more]
GCN5_ASHGO6.476e-1159.57Histone acetyltransferase GCN5 OS=Ashbya gossypii ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA85CC04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877988 ID=FC877988; Name=FC877988; organism=Citrus clementina; type=EST; length=941bp
CGTCGCACTCCCAAATAAAACCAAAAATTCCTGCGAAAACCTAACTCGTC
TCTTGAATCAAAACATTGATTCAAGTCCATCTGAAGAGAGATGGATACGC
ACGCCCACTCCGCTCACCTAACCGCACCGAACCGCTCCCGCAGCTCACAG
ACCCCGTCCCCGTCCCACTCCGCCTCTGCATCCGCCACGTCATCCATTCA
CAAGCGCAAGCTTGCAGCAACAGCCGCGGCAGGTGCGTCTGAAGACCACG
CGCCGCATGCATTCCCTCCCTCCTTCTCCGCCGACACTCGTGACGGCGCG
TTGACCTCGAATGACGACCTCGAGAGCATCTCCGCCCGCGGCGCCGACTC
TGACGCTGACGACTCCGAGGATGCCGTCGTTGACGACGATGAGGACGAGT
TCGAGAACGACAACGACTCCTCTATGCGTACTTTCACCGCGGCTCGCCTG
GAGAATAATAATTCCGTCGGCTCGGCAAGAAATACGAAGCTAAAGACGGA
GAATTCGACCGTTAAAATTGAGAATTCCGATGGCGGGAAGGAAGGGGTTA
CCTCCGGGAGTGGTGTGCTTGGGTCCACTGCTCTGGCCGGTAGCTCGGTG
CTGGGAACTGCAGGTAAAGAAGACACGGTGAAGATTTTTACAGAGAATAT
ACAAGCTAGTGGAGCTTATAGTGCAAGAGAGGAGCTCTTGAAGAGAGAGG
AGGAAGCTGGAAACCTGAAGTTCGTATGCCTTTCAAATGATGGTATTGAT
GAGCATATGGTTTGGTTGATAGGATTGAAGAATATATTTGCAAGGCAACT
ACCTAACATGCCTAAGGAGTACATTGTGCGTCTTGTGATGGATAGAAGCA
CAAATCGGTTATGGTTATCAGAGGAAATGTGGTTGTTGGTGGCATCACAT
ATCGCCCATATGTCAGTCAAAAGTTTGGGGGAGATAGCTTT
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