FC877992

Overview
NameFC877992
Unique NameFC877992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length931
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6122 contig Ccv1_Contig6122:30..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN2_RAT (Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.334e-78
Identity = 141/240 (58.75%), Postives = 186/240 (77.50%), Query Frame = 1 
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V++I   QK+MEK++ +K  EI++  +LAR++  ADA+ Y
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKAKADAECY 263
[Close]
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN2_PONAB (Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.334e-78
Identity = 141/240 (58.75%), Postives = 186/240 (77.50%), Query Frame = 1 
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V++I   QK+MEK++ +K  EI++  +LAR++  ADA+ Y
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKAKADAECY 263
[Close]
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN2_MOUSE (Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.334e-78
Identity = 141/240 (58.75%), Postives = 186/240 (77.50%), Query Frame = 1 
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V++I   QK+MEK++ +K  EI++  +LAR++  ADA+ Y
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKAKADAECY 263
[Close]
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN2_HUMAN (Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.334e-78
Identity = 141/240 (58.75%), Postives = 186/240 (77.50%), Query Frame = 1 
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V++I   QK+MEK++ +K  EI++  +LAR++  ADA+ Y
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKAKADAECY 263
[Close]
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERL2B_XENLA (Erlin-2-B OS=Xenopus laevis GN=erlin2-B PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 4.355e-78
Identity = 143/240 (59.58%), Postives = 186/240 (77.50%), Query Frame = 1 
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGHVGVY+RGGALL T + PGFHL LP IT ++ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D    APGI I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K AI EAEK A V++I   QK+MEK++ +K  EI++  +LAR++  ADA++Y
Sbjct:   24 HKIEEGHVGVYYRGGALLTTTSGPGFHLMLPFITSFKSVQSTLQTDEVKNVPCGTSGGVMIYFDRIEVVNYLISSAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHNLQEVYIELFDQIDEDLKLALQKDLNLMAPGIIIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKAIIEAEKVAQVAQIKYGQKVMEKETEKKISEIEDFAFLAREKARADAEYY 263
[Close]
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN2_XENTR (Erlin-2 OS=Xenopus tropicalis GN=erlin2 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.687e-78
Identity = 140/240 (58.33%), Postives = 187/240 (77.92%), Query Frame = 1 
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGHVGVY+RGGALL + + PGFHL LP IT ++ VQ T+QTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDKT I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K AI EAEK A V++I   QK+MEK++ +K  EI++  ++AR++  ADA++Y
Sbjct:   24 HKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITSFKSVQSTMQTDEVKNVPCGTSGGVMIYFDRIEVVNYLIPSAVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHNLQEVYIELFDQIDENLKLALQKDLNSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKAIIEAEKVAQVAEIKYGQKVMEKETEKKISEIEDSAFVAREKAKADAEYY 263
[Close]
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN2_BOVIN (Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.687e-78
Identity = 140/240 (58.33%), Postives = 186/240 (77.50%), Query Frame = 1 
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V++I   QK+MEK++ ++  EI++  +LAR++  ADA+ Y
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITFGQKVMEKETEKRISEIEDAAFLAREKAKADAECY 263
[Close]
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN1_MOUSE (Erlin-1 OS=Mus musculus GN=Erlin1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.655e-77
Identity = 137/240 (57.08%), Postives = 186/240 (77.50%), Query Frame = 1 
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGH+ VY+RGGALL + + PG+H+ LP IT +  VQ TLQTD+V ++PCGT GGVMI  ++IEVVN L    V++ +R+Y   YDKT I++KIHHE+NQFCS+H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V+KI  +QK+MEK++ ++  EI++  +LAR++  ADA++Y
Sbjct:   24 HKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNTMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKRAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAREKAKADAEYY 263
[Close]
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN1_PONAB (Erlin-1 OS=Pongo abelii GN=ERLIN1 PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 2.161e-77
Identity = 137/240 (57.08%), Postives = 186/240 (77.50%), Query Frame = 1 
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGH+ VY+RGGALL + + PG+H+ LP IT +  VQ TLQTD+V ++PCGT GGVMI  ++IEVVN L    V++ +R+Y   YDKT I++KIHHE+NQFCS+H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V+KI  +QK+MEK++ ++  EI++  +LAR++  ADA++Y
Sbjct:   24 HKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAREKAKADAEYY 263
[Close]
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN1_HUMAN (Erlin-1 OS=Homo sapiens GN=ERLIN1 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 2.161e-77
Identity = 137/240 (57.08%), Postives = 186/240 (77.50%), Query Frame = 1 
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGH+ VY+RGGALL + + PG+H+ LP IT +  VQ TLQTD+V ++PCGT GGVMI  ++IEVVN L    V++ +R+Y   YDKT I++KIHHE+NQFCS+H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V+KI  +QK+MEK++ ++  EI++  +LAR++  ADA++Y
Sbjct:   24 HKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAREKAKADAEYY 263
The following BLAST results are available for this feature:
BLAST of FC877992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERLN2_RAT3.334e-7858.75Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1[more]
ERLN2_PONAB3.334e-7858.75Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1[more]
ERLN2_MOUSE3.334e-7858.75Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1[more]
ERLN2_HUMAN3.334e-7858.75Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1[more]
ERL2B_XENLA4.355e-7859.58Erlin-2-B OS=Xenopus laevis GN=erlin2-B PE=2 SV=1[more]
ERLN2_XENTR5.687e-7858.33Erlin-2 OS=Xenopus tropicalis GN=erlin2 PE=2 SV=1[more]
ERLN2_BOVIN5.687e-7858.33Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1[more]
ERLN1_MOUSE1.655e-7757.08Erlin-1 OS=Mus musculus GN=Erlin1 PE=2 SV=1[more]
ERLN1_PONAB2.161e-7757.08Erlin-1 OS=Pongo abelii GN=ERLIN1 PE=2 SV=2[more]
ERLN1_HUMAN2.161e-7757.08Erlin-1 OS=Homo sapiens GN=ERLIN1 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA73AG04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877992 ID=FC877992; Name=FC877992; organism=Citrus clementina; type=EST; length=931bp
TCTCGCGCACATTTTGGCAACAGTTGAAACCCCGCCATGGATCCACAGCA
ACAAGGAGTAGGCGCTACACAGGCACAGCCTCGGCCTCAGCCTCAGCCTG
GCGATTCGTCTGCTATACTCGCCGTGTTCCTCACTTTCATCGCTATTGTC
TCACTGATATTGATCCCATCATCGTCATCCATCAAAAGTAGCCTGGCCAT
TTTGCACCAAATTCCAGAAGGCCACGTTGGAGTATATTGGAGAGGAGGTG
CCCTTCTAGAGACAATTACACACCCAGGCTTCCATCTGAAGTTGCCTTTG
ATAACACACTACGAGCCTGTTCAAGTGACCCTTCAGACAGATCAGGTTAC
TGACATTCCATGTGGGACCAAAGGGGGTGTAATGATCAACTTTGAGAAGA
TAGAGGTTGTTAACCGGCTTCGTAAGGAATATGTGTACGAGACTCTGCGC
GACTATGGCGTGCAATATGACAAGACATGGATATATGACAAGATTCATCA
TGAGATCAATCAGTTCTGTAGTTCTCATAGTCTGCAACAAGTCTATATTG
ATGTGTTTGATCAGATTGACGAAAAGATGAAGGATGCTCTTCAGGTTGAC
TGCACGCGTTATGCTCCAGGCATTGAAATTATCAGTGTGCGTGTTACAAA
GCCTACTATTCCAGATAGAATCAGAAGAAATTTTGAACAAATGGAAGAGG
AACGTACTAGGGTGTTAATTGCTATTGAGAAACAGAAAGTAGCTGAGAAA
GAGGCAGAGACAAGCAAAAAGATGGCTATCAGTGAAGCTGAGAAGAATGC
CAATGTTAGCAAGATCCTTATGGAACAGAAGTTGATGGAGAAGGACAGTG
CTCGGAAGCANGAGGAAATTGACAATCAAATGTACTTGGCTCGTCAAAGG
GGCCTGGCAGATGCTGATTTCTACCGCGTAC
back to top