FC877993

Overview
NameFC877993
Unique NameFC877993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10481 contig Ccv1_Contig10481:1..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_HUMAN (Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 6.182e-56
Identity = 114/256 (44.53%), Postives = 166/256 (64.84%), Query Frame = 3
Query:  174 MAKTKEKKVNVSGKPKHSLDANRTDGKSGS--RSASTVRRLNMYKTRPKRDRKGKVLQH-EFQSKELPNT--RIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQK--QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILL 920
            M K K K  +     K S + +R  G  G   R  +T+RRLNMY+ + +R+ +GK+++  ++QS     T  R++P+ +WFGNTR + Q  L+ F+EE+ + M   Y V++++ KLP SLL+D  +    +VH+LDTE F+  FGPK +RKRP L ASD +SL++ A+ S ++++Q  D     E     G R+  +  +++KGQSKRIWGELYKVIDSSDVVVQVLDARDP GTR  H+E +LK+    KH+I +
Sbjct:    1 MVKPKYKGRSTINPSKASTNPDRVQGAGGQNMRDRATIRRLNMYRQKERRNSRGKIIKPLQYQSTVASGTVARVEPNIKWFGNTRVIKQSSLQKFQEEMDTVMKDPYKVVMKQSKLPMSLLHDRIRPHNLKVHILDTESFETTFGPKSQRKRPNLFASDMQSLIENAEMSTESYDQGKDRDLVTEDT---GVRNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIETYLKKEKPWKHLIFV 253          
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_MOUSE (Nucleolar GTP-binding protein 2 OS=Mus musculus GN=Gnl2 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.055e-55
Identity = 115/256 (44.92%), Postives = 166/256 (64.84%), Query Frame = 3
Query:  174 MAKTKEKKVNVSGKPKHSLDANRTDGKSGS--RSASTVRRLNMYKTRPKRDRKGKVLQH-EFQSKELPNT--RIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQK--QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILL 920
            M K K K  +   +   S + +R  G  G   R   T+RRLNMY+ + +R+ +GKV++  ++QS     T  R++P+ +WFGNTR + Q  L+ F+EE+   M   Y V++++ KLP SLL+D  +   A+VH+LDTE F+  FGPK +RKRP L ASD +SL++ A+ S ++++Q  D       +E  G R+  +  +++KGQSKRIWGELYKVIDSSDVVVQVLDARDP GTR  H+E +LK+    KH+I +
Sbjct:    1 MVKPKYKGRSTINRSAASTNPDRVQGAGGQNMRDRGTIRRLNMYRQKERRNSRGKVIKPLQYQSTVASGTVARVEPNIKWFGNTRVIKQASLQKFQEEMDKVMKDPYKVVMKQSKLPMSLLHDRIQPHNAKVHILDTESFESTFGPKSQRKRPNLFASDMQSLLENAEMSTESYDQGKDRDLV---MEDTGVRNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKPWKHLIFV 253          
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_SCHPO (Nucleolar GTP-binding protein 2 OS=Schizosaccharomyces pombe GN=nog2 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.068e-55
Identity = 112/249 (44.98%), Postives = 157/249 (63.05%), Query Frame = 3
Query:  180 KTKEKKVNVSGKPKHSLDANRTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILL 920
            K ++ ++   G  +      R  G++  R+A  V R+NMY+  + K +  G++++  EFQS E+P  RIQPDRRWF NTR + Q  L  FRE +   ++  Y V+LR  KLP SLL ++ +  +V +L++EPF++ FGPK +RKRPK+       L K +D  Q+A+E+K +    A   E D      R  +F KGQSKRIW ELYKVIDSSDV++QVLDARDP GTRC  +ER+L+    HKHMIL+
Sbjct:    5 KKEKSRIGREGANEKKPGNLRVKGENFYRNAKDVARVNMYRGGKAKYNAAGELVRAAEFQSSEVPKARIQPDRRWFNNTRVIAQPTLTQFREAMGQKLNDPYQVLLRRNKLPMSLLQENTEIPKVRVLESEPFENTFGPKSQRKRPKISFDSVAELAKESDEKQNAYEEKIEERILANPDESDDVMLAARDAIFSKGQSKRIWNELYKVIDSSDVLIQVLDARDPVGTRCGTVERYLRNEASHKHMILV 253          
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_YARLI (Nucleolar GTP-binding protein 2 OS=Yarrowia lipolytica GN=NOG2 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.392e-54
Identity = 110/229 (48.03%), Postives = 148/229 (64.63%), Query Frame = 3
Query:  240 RTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQHE-FQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILL 920
            R  G +  R A  V++L+MYK  R K + +G+ +Q   FQSKE+PN RI P+RRWFGNTR + Q  L  FRE L      SY V+LR+ KLP SLL ++ K  +V +++TE + + FGPK +RK+P+L   D+  L   AD SQ  FE K +   S    + DG+    +  +F KGQSKRIW ELYKVIDSSDVV+ VLDARDP GTRC  +E+++K+   HKH+I +
Sbjct:   25 RVKGVNFYRDAKKVKKLSMYKEGRAKHNARGEEVQAATFQSKEIPNARIDPNRRWFGNTRVIAQDALNHFREALGETKRDSYQVLLRQNKLPMSLLEENNKIPQVKVVETESYANTFGPKAQRKKPQLAVGDFAELASAADESQQDFEAKKEEDNS---WKVDGWSQEAKEAIFHKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCTSVEQYIKKEAPHKHLIFV 250          
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_YEAST (Nucleolar GTP-binding protein 2 OS=Saccharomyces cerevisiae GN=NOG2 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.207e-51
Identity = 108/234 (46.15%), Postives = 148/234 (63.25%), Query Frame = 3
Query:  240 RTDGKSGSRSASTVRRLNMYKTRPK-RDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLN--DHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKN--DASTSAEGVEGD---GFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI 914
            R  G++  R +  V+ LNMY +  + R++KG +++   FQ   +P+ R+QPDRRWFGNTR ++Q  L+ FR  L      +Y V+LR  KLP SLL   D  +  +  +LDTE + DAFGPK +RKRP+L AS+ E LVK  +     +E+K   DA+    G + D   G+    +  +F KGQSKRIW ELYKVIDSSDVV+ VLDARDP GTRC  +E ++K+   HKH+I
Sbjct:   23 RVKGENFYRDSKRVKFLNMYTSGKEIRNKKGNLIRAASFQDSTIPDARVQPDRRWFGNTRVISQDALQHFRSALGETQKDTYQVLLRRNKLPMSLLEEKDADESPKARILDTESYADAFGPKAQRKRPRLAASNLEDLVKATNEDITKYEEKQVLDATLGLMGNQEDKENGWTSAAKEAIFSKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLI 256          
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_ASHGO (Nucleolar GTP-binding protein 2 OS=Ashbya gossypii GN=NOG2 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.988e-51
Identity = 109/255 (42.75%), Postives = 155/255 (60.78%), Query Frame = 3
Query:  177 AKTKEKKVNVSGKPKHSLDAN-RTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQHE-FQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLN--DHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTS----AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI 914
            AK ++++    G  K   D N R  G++  R    V+ LNMYK  +  R+ KG +++    QS ++P  R+QPDRRWFGNTR ++Q  L+ FR+ L    + SY V+LR  KLP SLL   D  +     ++DTEP+   FGPK +RK+P++ A+  E L K  D     +E+K +  ++    A   + DG+  + +  +F KGQSKRIW ELYKVIDSSDVV+ VLDARDP GTRC  +E ++K+   HKH+I
Sbjct:    4 AKKEQQRRIREGNTK---DGNLRVKGENFYRDGKRVKFLNMYKGGKSIRNAKGDLIRAAPLQSTDVPTARVQPDRRWFGNTRVISQDALQHFRDALGDKKNDSYQVLLRRNKLPMSLLEEKDTSESPTAKIIDTEPYGATFGPKAQRKKPRVAAASLEDLAKATDSDSQKYEEKKELDSTLGLMAATEQEDGWSQVAKEAIFHKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLI 255          
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_CANGA (Nucleolar GTP-binding protein 2 OS=Candida glabrata GN=NOG2 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 5.069e-50
Identity = 106/255 (41.57%), Postives = 158/255 (61.96%), Query Frame = 3
Query:  180 KTKEKKVNVSGKPKHSLDAN-RTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLN--DHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSA-----EGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI 914
            K K++++   G  K   D N R  G++  R +  V+ LNMYK+ +  +++ G V++  ++Q   +P+ R+QPDRRWFGNTR ++Q  L+ FR+ L      +Y V+LR  KLP SLL+  D  +  R  +L+TE F   FGPK +RK+P++ AS  E LV+  +     +E+K +   +      +  E +G+  + +  +F KGQSKRIW ELYKVIDSSDVV+ VLDARDP GTRC  +E ++K+   HKH+I
Sbjct:    6 KEKQRRIR-EGTTK---DGNIRVKGENFYRDSKRVQFLNMYKSGKAIKNKHGDVIRAADYQDTTIPDARVQPDRRWFGNTRVISQDALQHFRDALGETQKDTYQVLLRRNKLPMSLLDEKDSTESPRARILETESFDQTFGPKAQRKKPRVAASSLEELVQATEEENKTYEEKEELKATLGLMGKQEDEENGWTQVTKEAIFSKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLI 256          
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_KLULA (Nucleolar GTP-binding protein 2 OS=Kluyveromyces lactis GN=NOG2 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.926e-49
Identity = 108/252 (42.86%), Postives = 147/252 (58.33%), Query Frame = 3
Query:  186 KEKKVNVSGKPKHSLDAN-RTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQHE-FQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLN--DHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTS----AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI 914
            KEK+  +  +  ++ D N R  G++  R    V+ LNMYK  R  R+ KG +++    Q    P  R+ PDRRWFGNTR ++Q  L  FRE L  +   SY V+LR  KLP SLLN  D  +     +L+TEPF+  FGPK +RK+P++ AS  E L+         FE+K +  ++     +  E DG+    +  +F KGQSKRIW ELYKVIDSSDVV+ VLDARDP GTRC  +  ++     HKH+I
Sbjct:    6 KEKQRRI--REGNTKDGNLRVKGENFYRDTKRVQFLNMYKGGRSVRNAKGDIIKAAPLQDTAAPTARVAPDRRWFGNTRVISQDSLSHFREALGENKRDSYQVLLRRNKLPMSLLNEKDSAESPTAKILETEPFEQTFGPKAQRKKPRIAASSLEELISSTSTDNKTFEEKQELDSTLGLMGKQEEEDGWTQAAKEAIFHKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVTDYMTNETPHKHLI 255          
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_PNECA (Nucleolar GTP-binding protein 2 OS=Pneumocystis carinii GN=NOG2 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 8.093e-48
Identity = 102/221 (46.15%), Postives = 139/221 (62.90%), Query Frame = 3
Query:  264 RSASTVRRLNMYKT-RPKRDRKGKVL-QHEFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILL 920
            R A  VR +N+ K+ + KR++ GK++ Q EFQSK++ + RIQP RRWF NTR ++Q  L  FRE     ++    V+L++ KLP SLL +  K  + +++D EPF D FG K  RKR KL AS  E+L   A  S + + +KN    + +      F       +F KG SKRIW ELYK IDSSDV++Q+LDAR+P GTRC H+E +LK+   HKHMILL
Sbjct:   20 RDAKKVRWINLLKSGKAKRNKSGKIIKQGEFQSKDVQDARIQPYRRWFSNTRVISQDVLNMFRESFAEKLNDPCKVLLKQNKLPMSLLMEPTKTRKANIIDIEPFDDTFGKKSXRKRAKLYASSIENLSNFAFESYENYIKKNSEYENVDKNIQKSF-----EAIFSKGTSKRIWNELYKXIDSSDVIIQLLDARNPLGTRCKHVEEYLKKEKPHKHMILL 235          
BLAST of FC877993 vs. ExPASy Swiss-Prot
Match: NOG2_NEUCR (Nucleolar GTP-binding protein 2 OS=Neurospora crassa GN=nog-2 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.429e-44
Identity = 101/264 (38.26%), Postives = 152/264 (57.58%), Query Frame = 3
Query:  189 EKKVNVSGKPKHSLDANRTDGKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQA-RVH----LLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEG--DGFRD-----------LVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILL 920
            +++  V+G PK         G++  RSA  ++ LN+ K  +  R+++GKV++   +QS+++P   I+P+RRWF NTR ++Q  L  FRE +       Y+V+L+  KLP SL+ D  K A + H     +++EPF   FGPK +RKRPKL  +    L + ++ S D ++ + +      G  G   G  D             +  +F KGQSKRIW ELYKVIDSSDV++ V+DARDP GTRC H+E++L     HKH+I +
Sbjct:   12 QRQGKVTGDPK-------VKGENFYRSAKKIKALNVLKEGKAIRNKEGKVVKAASYQSRDVPTAVIEPNRRWFNNTRVISQDTLTSFREAIAEKDKDPYSVLLKSNKLPMSLIRDGPKDALKKHQAKMTIESEPFSQTFGPKAQRKRPKLSFNTIGDLTEHSEKSMDTYQARLEEIKLLSGASGYGGGLADDDVQEEDFSVATAKEAIFTKGQSKRIWNELYKVIDSSDVILHVIDARDPLGTRCRHVEKYLATEAPHKHLIFV 268          
The following BLAST results are available for this feature:
BLAST of FC877993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NOG2_HUMAN6.182e-5644.53Nucleolar GTP-binding protein 2 OS=Homo sapiens GN... [more]
NOG2_MOUSE1.055e-5544.92Nucleolar GTP-binding protein 2 OS=Mus musculus GN... [more]
NOG2_SCHPO3.068e-5544.98Nucleolar GTP-binding protein 2 OS=Schizosaccharom... [more]
NOG2_YARLI3.392e-5448.03Nucleolar GTP-binding protein 2 OS=Yarrowia lipoly... [more]
NOG2_YEAST1.207e-5146.15Nucleolar GTP-binding protein 2 OS=Saccharomyces c... [more]
NOG2_ASHGO5.988e-5142.75Nucleolar GTP-binding protein 2 OS=Ashbya gossypii... [more]
NOG2_CANGA5.069e-5041.57Nucleolar GTP-binding protein 2 OS=Candida glabrat... [more]
NOG2_KLULA1.926e-4942.86Nucleolar GTP-binding protein 2 OS=Kluyveromyces l... [more]
NOG2_PNECA8.093e-4846.15Nucleolar GTP-binding protein 2 OS=Pneumocystis ca... [more]
NOG2_NEUCR1.429e-4438.26Nucleolar GTP-binding protein 2 OS=Neurospora cras... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA85CC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877993 ID=FC877993; Name=FC877993; organism=Citrus clementina; type=EST; length=938bp
ATGAGAAAAGGAAAAACCCTAGCCCCAAATTAGCAAAGCAAGCCGCCCAC
TTCTGCAAACTCAGAACTCAAGTTGGCGCCACCCTTACATCAAGAGCTGA
AAGCCGCAATTTACTCAGCCTTCCGTCATCCTCCTTACAGGAATTCGTCG
CCTTTACTCACCGGTGAACGAAAATGGCAAAGACGAAAGAGAAGAAAGTG
AATGTGTCGGGCAAGCCGAAACACTCGCTGGACGCGAATCGTACGGACGG
GAAAAGCGGTAGCCGAAGTGCGTCGACAGTACGCCGCCTCAATATGTACA
AGACGAGGCCGAAACGCGACCGTAAGGGCAAAGTTTTGCAGCACGAGTTT
CAGTCGAAGGAGTTGCCCAACACTCGCATTCAGCCAGACCGCCGCTGGTT
CGGGAACACACGTTGTGTGAATCAGAAGCAGCTCGAGTTCTTTCGTGAAG
AGCTACAGAGCCATATGTCTAGTAGCTATAATGTTATCTTGAGAGAGAAA
AAACTGCCCTTTTCTCTCCTAAATGATCACCAGAAGCAAGCTAGAGTTCA
CCTCCTTGATACCGAGCCTTTTCAAGATGCCTTTGGACCTAAGGGAAAGA
GGAAGAGGCCAAAGTTATTGGCATCAGATTACGAATCTTTAGTTAAGAGA
GCTGATGGTTCTCAAGATGCCTTTGAGCAGAAGAATGATGCTAGTACATC
AGCAGAAGGAGTTGAGGGAGATGGATTTAGGGATCTTGTTCGGCATACAA
TGTTTGAGAAGGGTCAAAGTAAACGTATATGGGGAGAACTGTACAAAGTA
ATAGACTCGTCGGATGTTGTTGTCCAGGTTTTGGATGCTAGAGACCCTCA
AGGCACAAGATGTCATCATCTTGAGAGGCATCTAAAAGAGCATTGCAAAC
ATAAGCACATGATTCTTCTGTAAACAAGTGCGATCTTG
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