FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2874 contig Ccv1_Contig2874:1..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.210e-78
Identity = 147/208 (70.67%), Postives = 165/208 (79.33%), Query Frame = 1
Query:  283 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQKY 903
            +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ KA  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV               KSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER+D AL EGV+ LKL+L+K   ES R F+  QKY
Sbjct:    1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKY 208          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.986e-55
Identity = 100/191 (52.36%), Postives = 134/191 (70.16%), Query Frame = 1
Query:  331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQKY 903
            PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ +  G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   F+ +QKY
Sbjct:   61 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKY 251          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 5.513e-54
Identity = 97/187 (51.87%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAKPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G                +S+++  +G+R+F RLRIGIGRPPG+MD   F+L++FN   +E +D   Q G+E +++LL +G  +SA   +T
Sbjct:   94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVNT 280          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.513e-54
Identity = 100/191 (52.36%), Postives = 129/191 (67.54%), Query Frame = 1
Query:  331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQKY 903
            PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MNT+  KA  G G + D P+LLAKPQTYMN SGES G LA++Y++PL  +L+ +D+M LP GV               KSVM +  G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+  G  +    F+ +QKY
Sbjct:   45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKY 235          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.573e-53
Identity = 99/191 (51.83%), Postives = 131/191 (68.59%), Query Frame = 1
Query:  331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQKY 903
            PWL  GLGNPG KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVLL KPQ+Y+N SGE+ GPLAAYY++PL  +LV +D+M LP GV               ++VM     +RE  RL IGIG PPG+MD +AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   F+ +QKY
Sbjct:   64 PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKY 254          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.667e-53
Identity = 96/190 (50.53%), Postives = 135/190 (71.05%), Query Frame = 1
Query:  328 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            +PWLFVGLGNPG  Y+GTRHNVGFEMID  AE++GIS++++  KA  G+G +GDAP++LAKPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP                  +S++N+ + NR+F RLRIGIGRPPG+MDP  F+L+ FN   +E +D A   G+E ++++  +G  +SA + +T Q
Sbjct:   54 KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQ 243          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.358e-52
Identity = 102/191 (53.40%), Postives = 128/191 (67.02%), Query Frame = 1
Query:  331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQKY 903
            PWL VGLGNPG KY GTRHN+GFEMID  A +  ISMNT+  KA  G G VG+ P+LL KPQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GV               K+V  +  G R + RL IGIG PPG MD KAFLLQKF+ + R+++D  L++GVE +K L+ +G ++S   F+  QKY
Sbjct:   51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKY 241          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: CRS2L_ORYSJ (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.010e-39
Identity = 78/103 (75.73%), Postives = 85/103 (82.52%), Query Frame = 1
Query:  319 AVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 627
            +V  PWLFVGLGNPG+KY+ TRHNVGF+MID FA+SQGIS+     KA FG+G V   PVLLAKPQTYMNLSGES GPLAAYYKLPLNRVLV  DDM LPCGV
Sbjct:   56 SVINPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGV 158          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_THEFY (Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.408e-33
Identity = 69/180 (38.33%), Postives = 108/180 (60.00%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 873
            WL VGLGNPG KY G RHNVGF ++D  A  +G         A   +  VGDAPV+LAKP +YMNLSG     L+A+YK+P++R++V HD++ +P                  +S+  +  G+ ++ R+R+GIGRPPG+MD  +F+LQ F+   R+ +D  +    + ++ +++ GL ++
Sbjct:   35 WLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CHLAD (Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.021e-31
Identity = 67/188 (35.64%), Postives = 103/188 (54.79%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894
            WL VGLGNPG++Y  TRHN+GF  ++  AE  G++      K+   +G +    V L KPQTYMNLSG++   L  +YK+ P   +LV +DD+ LP                  +S++    G  EF RLRIGIG+PPGQMD   ++L +F       +   L    + +++++S+GLT +   ++ +
Sbjct:    2 WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKPQTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTAAMNRYNPL 188          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTHM_ARATH3.210e-7870.67Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidop... [more]
CRS2_MAIZE4.986e-5552.36Chloroplastic group IIB intron splicing facilitato... [more]
PTHC_ARATH5.513e-5451.87Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidop... [more]
CRS2B_ARATH5.513e-5452.36Chloroplastic group IIB intron splicing facilitato... [more]
CRS2_ORYSJ3.573e-5351.83Chloroplastic group IIB intron splicing facilitato... [more]
PTHM_ORYSJ4.667e-5350.53Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sa... [more]
CRS2A_ARATH1.358e-5253.40Chloroplastic group IIB intron splicing facilitato... [more]
CRS2L_ORYSJ5.010e-3975.73CRS2-like protein, chloroplastic OS=Oryza sativa s... [more]
PTH_THEFY2.408e-3338.33Peptidyl-tRNA hydrolase OS=Thermobifida fusca (str... [more]
PTH_CHLAD5.021e-3135.64Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
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