FC877996
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 3.210e-78 Identity = 147/208 (70.67%), Postives = 165/208 (79.33%), Query Frame = 1 Query: 283 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQKY 903 +++R RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ KA GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV KSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+ ARER+D AL EGV+ LKL+L+K ES R F+ QKY Sbjct: 1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKY 208
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 4.986e-55 Identity = 100/191 (52.36%), Postives = 134/191 (70.16%), Query Frame = 1 Query: 331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQKY 903 PWL GLGNPG+KY GTRHNVGFEM+D A +GI+MNT+ K+ G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+ + G REF RL IGIG PPG+MDP+AFLLQKF++ R +IDTAL++GV+ ++ L+ KG + S F+ +QKY Sbjct: 61 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKY 251
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2) HSP 1 Score: 211.46 bits (537), Expect = 5.513e-54 Identity = 97/187 (51.87%), Postives = 136/187 (72.73%), Query Frame = 1 Query: 331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891 PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAKPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G +S+++ +G+R+F RLRIGIGRPPG+MD F+L++FN +E +D Q G+E +++LL +G +SA +T Sbjct: 94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVNT 280
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 5.513e-54 Identity = 100/191 (52.36%), Postives = 129/191 (67.54%), Query Frame = 1 Query: 331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQKY 903 PWL VGLGNPG+KY GTRHNVGFEMID A +G+ MNT+ KA G G + D P+LLAKPQTYMN SGES G LA++Y++PL +L+ +D+M LP GV KSVM + G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+ G + F+ +QKY Sbjct: 45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKY 235
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 3.573e-53 Identity = 99/191 (51.83%), Postives = 131/191 (68.59%), Query Frame = 1 Query: 331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQKY 903 PWL GLGNPG KY GTRHNVGFEM+D A +GI+MNT+ K+ G G +G+ PVLL KPQ+Y+N SGE+ GPLAAYY++PL +LV +D+M LP GV ++VM +RE RL IGIG PPG+MD +AFLLQKF++ R +IDTAL++GV+ ++ L+ KG + S F+ +QKY Sbjct: 64 PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKY 254
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 4.667e-53 Identity = 96/190 (50.53%), Postives = 135/190 (71.05%), Query Frame = 1 Query: 328 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897 +PWLFVGLGNPG Y+GTRHNVGFEMID AE++GIS++++ KA G+G +GDAP++LAKPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP +S++N+ + NR+F RLRIGIGRPPG+MDP F+L+ FN +E +D A G+E ++++ +G +SA + +T Q Sbjct: 54 KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQ 243
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.358e-52 Identity = 102/191 (53.40%), Postives = 128/191 (67.02%), Query Frame = 1 Query: 331 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQKY 903 PWL VGLGNPG KY GTRHN+GFEMID A + ISMNT+ KA G G VG+ P+LL KPQ YMN SGES GPLAAYY++PL +L+ +DDMGL GV K+V + G R + RL IGIG PPG MD KAFLLQKF+ + R+++D L++GVE +K L+ +G ++S F+ QKY Sbjct: 51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKY 241
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: CRS2L_ORYSJ (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 5.010e-39 Identity = 78/103 (75.73%), Postives = 85/103 (82.52%), Query Frame = 1 Query: 319 AVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 627 +V PWLFVGLGNPG+KY+ TRHNVGF+MID FA+SQGIS+ KA FG+G V PVLLAKPQTYMNLSGES GPLAAYYKLPLNRVLV DDM LPCGV Sbjct: 56 SVINPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGV 158
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_THEFY (Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 2.408e-33 Identity = 69/180 (38.33%), Postives = 108/180 (60.00%), Query Frame = 1 Query: 334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 873 WL VGLGNPG KY G RHNVGF ++D A +G A + VGDAPV+LAKP +YMNLSG L+A+YK+P++R++V HD++ +P +S+ + G+ ++ R+R+GIGRPPG+MD +F+LQ F+ R+ +D + + ++ +++ GL ++ Sbjct: 35 WLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CHLAD (Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 5.021e-31 Identity = 67/188 (35.64%), Postives = 103/188 (54.79%), Query Frame = 1 Query: 334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894 WL VGLGNPG++Y TRHN+GF ++ AE G++ K+ +G + V L KPQTYMNLSG++ L +YK+ P +LV +DD+ LP +S++ G EF RLRIGIG+PPGQMD ++L +F + L + +++++S+GLT + ++ + Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKPQTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTAAMNRYNPL 188 The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bpback to top |