FC877999

Overview
NameFC877999
Unique NameFC877999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:15..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.359e-36
Identity = 77/175 (44.00%), Postives = 118/175 (67.43%), Query Frame = 3
Query:  186 PGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 707
            PGK+FIGGL+ +TS      +FG+YG+I+++++MKD  T + RGFGFVT++DP+ VDKV+ + TH ++GK+V+ K   P+ A      +TKKIFVGG+ +    ++ K +F QFG +++  +M D  T+R RGFGF+TF +E  VD  + + +  E+    VE KKA+PK+  LP
Sbjct:   28 PGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK-VCEIHFHEINNKMVECKKAQPKEVMLP 201          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.997e-35
Identity = 74/167 (44.31%), Postives = 112/167 (67.07%), Query Frame = 3
Query:  192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 692
            K+FIGGL  +T+     ++FGKYG +TD  IMKD  TG+ RGFGF+++  PS VD+V++  HI++GK ++ KR IP+     +  KT KIFVGGI   V   EF++FF Q+G + + Q+M D  T +SRGFGF+T+D+  AV D + +   ++    ++E+K+AEP+
Sbjct:  160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV-DRVCQNKFIDFKDRKIEIKRAEPR 321          

HSP 2 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  189 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPK 422
            GKIF+GG+  +    +F + F ++G I D+ +M D+ TGQ RGFGFVTY     VD+V ++  I    +++EIKR  P+
Sbjct:  243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.691e-34
Identity = 77/213 (36.15%), Postives = 125/213 (58.69%), Query Frame = 3
Query:  147 DDRSQPHTGDGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK---KPNLPQPSYRRYNNPKPAYGSGFGDAYG 776
            +D ++  +      GK+FIGGL  ET+      +F ++GE+ D  +M+D  TG+ RGFGF+T+ +P  V++V+   H ++GK ++ KR IP+     +  KT K+FVGG+P    E+EF++FF QFG V +  +M D  T R RGFGF+T++ E AV+  +++   + + G  VEVK+A PK   + +  +  +  + N  P Y     + YG
Sbjct:  149 EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR----EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ-PYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYYAQNM-NMYG 355          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.189e-33
Identity = 73/175 (41.71%), Postives = 114/175 (65.14%), Query Frame = 3
Query:  186 PGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 707
            PGK+FIGGL+ +TS      +F K+GEI + ++M+D  T + RGFGFVT+ADP+ VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+ ++   ++ K +F QFG+V++  +M D +T+R RGFGF+TF+ E  V+  + + +  E+    VE KKA+PK+   P
Sbjct:   20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIHFHEINNKMVECKKAQPKEVMFP 193          

HSP 2 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  423 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 695
            G+         K+F+GG+    + D  +D+F +FGE++E  +MRD +T RSRGFGF+TF    +VD +L + +  EL    ++ K A P++
Sbjct:   11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 100          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.189e-33
Identity = 73/175 (41.71%), Postives = 114/175 (65.14%), Query Frame = 3
Query:  186 PGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 707
            PGK+FIGGL+ +TS      +F K+GEI + ++M+D  T + RGFGFVT+ADP+ VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+ ++   ++ K +F QFG+V++  +M D +T+R RGFGF+TF+ E  V+  + + +  E+    VE KKA+PK+   P
Sbjct:   20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIHFHEINNKMVECKKAQPKEVMFP 193          

HSP 2 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  423 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 695
            G+         K+F+GG+    + D  +D+F +FGE++E  +MRD +T RSRGFGF+TF    +VD +L + +  EL    ++ K A P++
Sbjct:   11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 100          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33
Identity = 77/197 (39.09%), Postives = 123/197 (62.44%), Query Frame = 3
Query:  189 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776
            GK+F+GGL+ ET+     ++F ++G+I D V+MK+ ++G+ RGFGFVT+ADP+ V+ V+++  H ++G+ ++ K   P+     K     K+F+GG+PS+V E + + FF ++G+V E  IM D    +SRGFGF++F+ E +V+  +     + L G QVE+KKAEP+  +  Q S    NN      S  G AYG
Sbjct:    7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEH-VTNERYINLNGKQVEIKKAEPRDGSGGQNS----NN------STVGGAYG 192          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 85/245 (34.69%), Postives = 125/245 (51.02%), Query Frame = 3
Query:  105 DSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR------------------RYNNPKPAYGS--GFGDAYG 776
            ++ D   +   +   D     +G      K+F+GGL+ ET+  +   HFGKYGEI    +  D +TG+ RGF F+ + +   +DKV   D HIIN K+V+ K+   +           KIFVGG+ + ++++E K +F QFG + E ++  D   S+ +GF FITFD+EQ V DLL K  K ++AG +V+VK+A PK  N      R                   YNN     GS  G+G  YG
Sbjct:   28 ENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG---------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYG 262          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.285e-31
Identity = 78/207 (37.68%), Postives = 123/207 (59.42%), Query Frame = 3
Query:  144 EDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYG 752
            E D  QP      SP    K+FIGGL+ +T+     ++FG++GE+ + ++M+D  T + RGFGFVT+ D + VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V+  + + +  E+    VE KKA+PK+   P  S R  +   P YG
Sbjct:    2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP-YG 206          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.984e-31
Identity = 78/207 (37.68%), Postives = 123/207 (59.42%), Query Frame = 3
Query:  144 EDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYG 752
            E D  QP      SP    K+FIGGL+ +T+     ++FG++GE+ + ++M+D  T + RGFGFVT+ D + VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V+  + + +  E+    VE KKA+PK+   P  S R  +   P YG
Sbjct:    2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP-YG 206          
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.984e-31
Identity = 78/207 (37.68%), Postives = 123/207 (59.42%), Query Frame = 3
Query:  144 EDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYG 752
            E D  QP      SP    K+FIGGL+ +T+     ++FG++GE+ + ++M+D  T + RGFGFVT+ D + VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V+  + + +  E+    VE KKA+PK+   P  S R  +   P YG
Sbjct:    2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP-YG 206          
The following BLAST results are available for this feature:
BLAST of FC877999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
MSIR6_DROME2.359e-3644.00RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
HRP1_YEAST1.997e-3544.31Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]
YHKF_SCHPO1.691e-3436.15Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
MSI2H_MOUSE3.189e-3341.71RNA-binding protein Musashi homolog 2 OS=Mus muscu... [more]
MSI2H_HUMAN3.189e-3341.71RNA-binding protein Musashi homolog 2 OS=Homo sapi... [more]
RB27C_DROME9.277e-3339.09Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
SQD_DROME2.699e-3234.69RNA-binding protein squid OS=Drosophila melanogast... [more]
MSI1H_HUMAN2.285e-3137.68RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
MSI1H_RAT2.984e-3137.68RNA-binding protein Musashi homolog 1 OS=Rattus no... [more]
MSI1H_MOUSE2.984e-3137.68RNA-binding protein Musashi homolog 1 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE02RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877999 ID=FC877999; Name=FC877999; organism=Citrus clementina; type=EST; length=776bp
CTTCCAATTAAACTTCTCTGTCTTCTCCTTCTTCACCGCCGTTATAACGT
CGCTTAAATCCAGAACCCATGGACCCAGAATCTAATGAAGGAATTGTTGA
CAGAGATTCTAACGACGTTCATAAATCGTCAGACCACCACCCAGAAGATG
ACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCCCTGGAAAAATTTTT
ATTGGAGGTTTAGCTAGAGAGACGTCGTCAGCTCAATTTATCAAGCATTT
CGGTAAATATGGTGAAATTACGGATTCTGTGATAATGAAGGACCGGAAAA
CGGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATGCTGATCCCTCTGTA
GTTGATAAAGTCATTGAAGACACTCACATTATTAATGGGAAACAGGTGGA
AATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTCTAAGGATTTCAAGA
CGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCGGTGAATGAAGATGAA
TTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAAGAGCACCAAATCAT
GCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGGATTTATCACTTTTG
ACACGGAGCAAGCAGTTGATGACCTTTTGGCAAAGGGTAACAAGCTTGAG
TTGGCTGGAGCCCAGGTGGAGGTCAAGAAAGCAGAACCAAAGAAACCAAA
CCTACCACAACCATCTTATAGGCGATACAATAATCCTAAACCCGCATATG
GTAGTGGCTTTGGAGATGCTTACGGT
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