FC878001

Overview
NameFC878001
Unique NameFC878001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5557 contig Ccv1_Contig5557:161..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.779e-49
Identity = 100/253 (39.53%), Postives = 141/253 (55.73%), Query Frame = 3
Query:   30 GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIK 788
            G VD    P ++  +G W+A  FI+G E  ER AYYG+ +NL+ YL  +L +  ATAA  V  WSGT  + PL+GAF+AD++LGR+ TI     IY+ G                +C     A +C P+  Q  VF  +LY++A+G GG KPC  +FGADQFD  +  E+  KSSFFNW+YF I+ GA     V+++IQ N+ W  GFG+P             G++ YR  ++    +P  RI +V V A +
Sbjct:   11 GTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN----ADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR--LQRPGGSPLTRIFQVIVAAFR 257          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.446e-49
Identity = 99/262 (37.79%), Postives = 145/262 (55.34%), Query Frame = 3
Query:   30 GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASE 815
            G VD +G  + R  +G W+A SF++  EV ER AYYGISSNL+ Y+T +L + T  ++  V  W GT+ L P+LGA++AD+  GR+ T V++S IY+LG                 C   N          Q+ VF  +LY +AIG GG KP     GADQFD  +P+++  K SFFNWW F I FG      V++Y+QDN+ WA+G+G+              GT+ YR   K    +PF ++ RV V +++  +  ++S+
Sbjct:   14 GTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRH--KLPMGSPFTKMARVIVASLRKAREPMSSD 273          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.419e-49
Identity = 100/262 (38.17%), Postives = 139/262 (53.05%), Query Frame = 3
Query:   30 GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASE 815
            G VD QG P+ R   G W+A SF++  EV ER AYYGISSNL  Y+T +L + T  ++  V  W GT+ L P+LGA++ D+ LGR+ T V++  IY  G                +C   N          Q+ VF  +LY +AIG GG KP     GADQFD  +P+E+  K SFFNWW F I FG      V++Y+QDN+ W LG+G+P             GT  YR  + +   +PF ++ RV V + +   A +  +
Sbjct:   14 GTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPT--GSPFTKMARVIVASFRKANAPMTHD 273          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.178e-48
Identity = 109/278 (39.21%), Postives = 152/278 (54.68%), Query Frame = 3
Query:   30 GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFEFLNKAL 863
            G VD  G P  +  +G W+A  FI+G E  ER AYYGI+ NLITYLT +L +   +AA  V  W GT  L PL+GA LAD++ GR+ TI   S IY +G                +C  +    S +P   Q  +F   LYL+A+G GG KPC  +FGADQFD  + +ER  K+SFFNW+YF I+ GA  +  ++++IQ+N  W LGFGIP             GT  YRF  +    +P  RI +V V +   RK+++   ++A    + +  N A+
Sbjct:   28 GSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD-FCPSATPA--QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRF--QKPGGSPITRISQVVVASF--RKSSVKVPEDATLLYETQDKNSAI 298          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.065e-43
Identity = 96/265 (36.23%), Postives = 145/265 (54.72%), Query Frame = 3
Query:   30 GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEA 824
            G +D   +P ++  +G W+A  FI+G E  ER AYYG+S+NLI YL  Q+     +A+ +V+ WSGT    PL+GAF+AD++LGR+ TI    +IYI G                      + ++C     Q  +   +LYL+A+G GG KPC  +FGADQFD  + +E+ +KSSFFNW+YF I+ GA     V+++IQ N+ W  G G+P             G+  YR  ++    +P  R+ +V V + +  K  +  EDE+
Sbjct:   12 GTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP-----TCSGETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR--LQKPGGSPLTRMLQVIVASCRKSKVKI-PEDES 268          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.591e-39
Identity = 92/259 (35.52%), Postives = 132/259 (50.97%), Query Frame = 3
Query:   39 DHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASE 815
            D QGRP DR  +GGW +A+ I+ +E  ER    GI  NL+TYLTG +    ATAA  V  + GT+ +L LLG F+AD+FLGR+ TI + + I   G                 C    ++        Q+ V   +LYL A+G GG K     FG+DQFD   P+ER   + FFN ++F I+ G+   + V++Y+QD++    G+GI              GT  YRF  K    +P  ++  V V A + RK  L ++
Sbjct:   17 DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRF--KKLIGSPMTQVAAVIVAAWRNRKLELPAD 273          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.214e-32
Identity = 86/277 (31.05%), Postives = 124/277 (44.77%), Query Frame = 3
Query:   75 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLY-LVAIGQGGHKPCTQAFGADQFD-AQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEA-------------QSSQQFEFLNKA 860
            GG     FII  E  E+ A YG+  N+I YL        A     + +WS  ++  PLLGAFL+DS+LGRF TI +ASL   LG                 C        C       +  ++S + L++IG GG +PC+ AFGADQ D  +NP+  R   SFF W+Y   +         ++YIQ++L W +GFG+P              +  Y    +   ++ F  + +  V A K RK +L    ++               SQ+  FLNKA
Sbjct:   23 GGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLY--VTRGVTKSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKA 297          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: PEPT1_DROME (Peptide transporter family 1 OS=Drosophila melanogaster GN=yin PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.687e-21
Identity = 66/219 (30.14%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   84 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA--NSTILVVIYIQ-----DNLNWALGFGIPCXXXXXXXXXXXXGTKTYR 719
            ++ +FII  E  ERF YYG+ + L+ YLT +LG +  TA    + ++    + PL+GA +AD +LG+++TI+  SL+Y LG                                   V +  L L+AIG GG KPC  AFG DQF    P +    + FF+ +YF I+ G+  ++T   ++        D   ++L FG+P             G + YR
Sbjct:   34 KSVAFIISNEFCERFNYYGMRTILVLYLTNKLGYNEETATVLFHTFTMLVYIFPLIGALIADGWLGKYKTILYLSLVYSLGAMVVSFGAVPLSGMPTKA-----------------VTVVGLLLIAIGTGGIKPCVSAFGGDQFSL--PAQSFQLAKFFSLFYFAINAGSLISTTFTPILRADVHCFGDQDCFSLAFGVPAILMIFSVIIFMAGKRLYR 233          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A1_HUMAN (Solute carrier family 15 member 1 OS=Homo sapiens GN=SLC15A1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 72/242 (29.75%), Postives = 116/242 (47.93%), Query Frame = 3
Query:   96 FIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA--NSTILVVIYIQD------NLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSK-QRNPFARIGRVFVVAIKTR 794
            FI+  E  ERF+YYG+ + LI Y T  +      + A  + +     L P+LGA +ADS+LG+F+TIV  S++Y +G                D  ++ T  S   H   +++ +  L L+A+G GG KPC  AFG DQF+    ++R   + FF+ +Y  I+ G+  ++ I  ++ +Q          + L FG+P             G+  Y+   K K Q N   ++ +    AIK R
Sbjct:   18 FIVVNEFCERFSYYGMRAILILYFTNFISWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIG---QAVTSVSSINDLTDHNHDGTPDSLPVH---VVLSLIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQR---NRFFSIFYLAINAGSLLSTIITPMLRVQQCGIHSKQACYPLAFGVPAALMAVALIVFVLGSGMYK---KFKPQGNIMGKVAKCIGFAIKNR 247          
BLAST of FC878001 vs. ExPASy Swiss-Prot
Match: S15A1_MOUSE (Solute carrier family 15 member 1 OS=Mus musculus GN=Slc15a1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 70/241 (29.05%), Postives = 113/241 (46.89%), Query Frame = 3
Query:   96 FIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA--NSTILVVIYIQ------DNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFARIGRVFVVAIKTR 794
            FI+  E  ERF+YYG+ + L+ Y    LG     + A  + +     L P+LGA +ADS+LG+F+TIV  S++Y +G                D  +N +  S   H   + + +  L L+A+G GG KPC  AFG DQF+    ++R   + FF+ +Y  I+ G+  ++ I  ++ +Q          + L FG+P             G+  Y+      Q N   ++ +    AIK R
Sbjct:   18 FIVVNEFCERFSYYGMRALLVLYFRNFLGWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIG---QAVISVSSINDLTDHDHNGSPDSLPVH---VALSMVGLALIALGTGGIKPCVSAFGGDQFEEGQEKQR---NRFFSIFYLAINGGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALMAVALIVFVLGSGMYKKF--QPQGNIMGKVAKCIGFAIKNR 247          
The following BLAST results are available for this feature:
BLAST of FC878001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PTR1_ARATH3.779e-4939.53Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR3B_ARATH6.446e-4937.79Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR3A_ARATH8.419e-4938.17Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR2_ARATH4.178e-4839.21Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH1.065e-4336.23Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
CHL1_ARATH1.591e-3935.52Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR2X_ARATH3.214e-3231.05Probable peptide transporter At1g52190 OS=Arabidop... [more]
PEPT1_DROME5.687e-2130.14Peptide transporter family 1 OS=Drosophila melanog... [more]
S15A1_HUMAN7.427e-2129.75Solute carrier family 15 member 1 OS=Homo sapiens ... [more]
S15A1_MOUSE2.161e-2029.05Solute carrier family 15 member 1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA85CC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878001 ID=FC878001; Name=FC878001; organism=Citrus clementina; type=EST; length=864bp
CCGAAACTCTGCTCCCAGAAAACACAATTGGCTTTGTGGATCACCAGGGT
CGTCCGATCGACAGATTAAACTCCGGTGGCTGGAGAGCAGCATCTTTCAT
TATAGGTGTTGAAGTTGCAGAGAGGTTTGCATATTATGGGATATCATCAA
ATCTCATTACATATTTGACGGGACAGCTTGGTGAGTCGACGGCGACGGCA
GCTGCGGCGGTCAATGTCTGGTCGGGAACGGCGTCGCTGCTACCCCTTTT
AGGGGCATTTCTTGCTGATTCTTTTCTTGGCCGTTTTCGCACCATCGTTG
TTGCTTCTCTCATTTACATCTTGGGACTAAGCATGATGACTCTCTTGGCT
TTGATAACTTTGCTAAGCAGTTCAGATTGCCAAAATAACAACACTGCCAA
ATCCTGTTCTCCTCATCATTTCCAAATAATCGTATTTATCTTCTCCCTAT
ATCTAGTAGCCATTGGTCAAGGAGGGCACAAGCCTTGCACTCAGGCATTT
GGTGCTGATCAGTTTGATGCACAGAACCCTCAGGAACGCAGAGCCAAAAG
CTCTTTTTTCAATTGGTGGTATTTTGGTATATCCTTTGGCGCCAATTCAA
CAATTCTGGTTGTAATTTACATCCAAGATAACCTTAATTGGGCTCTTGGA
TTTGGGATTCCCTGTGCCTTTATGGTAGCTGCACTTGTTCTTTTCCTACT
TGGAACTAAGACCTACAGGTTTAGCATTAAAAGTAAACAGAGAAACCCAT
TTGCAAGAATTGGTCGAGTGTTTGTTGTTGCAATTAAGACCAGGAAAGCT
ACTCTGGCTAGTGAAGATGAAGCTCAAAGTTCTCAGCAGTTCGAGTTTCT
GAACAAGGCCTTGC
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