FC878007

Overview
NameFC878007
Unique NameFC878007
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length851
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878007_ssr248 microsatellite FC878007_ssr248:248..257. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878007_ssr194 microsatellite FC878007_ssr194:194..205. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6419 contig Ccv1_Contig6419:14..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878007 vs. ExPASy Swiss-Prot
Match: APXS_ARATH (L-ascorbate peroxidase S, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=APXS PE=1 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 1.485e-82
Identity = 147/182 (80.77%), Postives = 165/182 (90.66%), Query Frame = 1
Query:  307 RRSSVNRGY-STVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHT 849
            R +SVNR + ST   TK ++SDPDQLK+AREDI+ELL + FCHPILVRLGWHDAGTY+KNI+EWP+RGGAN SLRF++ELKHAANAGLVNAL LI+ IK+KYSG++YADLFQLASATAIEEAGGPKIPMKYGRVD SGPE CPEEGRLP AGPPSPA HLR VFYRMGL+DK+IVALSGAHT
Sbjct:   82 RIASVNRSFNSTTAATKSSSSDPDQLKNAREDIKELLSTKFCHPILVRLGWHDAGTYNKNIKEWPQRGGANGSLRFDIELKHAANAGLVNALNLIKDIKEKYSGISYADLFQLASATAIEEAGGPKIPMKYGRVDASGPEDCPEEGRLPDAGPPSPATHLREVFYRMGLDDKDIVALSGAHT 263          
BLAST of FC878007 vs. ExPASy Swiss-Prot
Match: APXT_ARATH (L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.536e-79
Identity = 142/184 (77.17%), Postives = 161/184 (87.50%), Query Frame = 1
Query:  298 ISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHT 849
            + Q++  +N   + + + KCAASD  QL SA+EDI+ LL++ FCHPILVRLGWHDAGTY+KNIEEWP RGGAN SLRFE ELKHAANAGL+NALKLIQP+KDKY  ++YADLFQLASATAIEEAGGP IPMKYGRVDV  PEQCPEEGRLP AGPPSPA+HLR+VFYRMGL+DKEIVALSGAHT
Sbjct:   59 VLQKKHPINGTSTRMISPKCAASDAAQLISAKEDIKVLLRTKFCHPILVRLGWHDAGTYNKNIEEWPLRGGANGSLRFEAELKHAANAGLLNALKLIQPLKDKYPNISYADLFQLASATAIEEAGGPDIPMKYGRVDVVAPEQCPEEGRLPDAGPPSPADHLRDVFYRMGLDDKEIVALSGAHT 242          
BLAST of FC878007 vs. ExPASy Swiss-Prot
Match: APX6_ORYSJ (Probable L-ascorbate peroxidase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=APX6 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.784e-78
Identity = 142/172 (82.56%), Postives = 155/172 (90.12%), Query Frame = 1
Query:  343 PTTKCAASDPD---QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHT 849
            P +  AA+  D   +L+ ARED+++LLKST CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRFE+ELKHAANAGLVNALKLIQPIKDK++GVTYADLFQLASATAIEEAGGPKIPM YGRVDV+ PEQCP EGRLPAAGPPSPAEHLR VFYRMGL+DKEIVALSGAHT
Sbjct:   28 PASSSAAAAGDAAAELRGAREDVKQLLKSTSCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFEIELKHAANAGLVNALKLIQPIKDKHAGVTYADLFQLASATAIEEAGGPKIPMIYGRVDVAAPEQCPPEGRLPAAGPPSPAEHLREVFYRMGLSDKEIVALSGAHT 199          
BLAST of FC878007 vs. ExPASy Swiss-Prot
Match: APX8_ORYSJ (Probable L-ascorbate peroxidase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=APX8 PE=2 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 2.453e-77
Identity = 137/164 (83.54%), Postives = 150/164 (91.46%), Query Frame = 1
Query:  358 AASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHT 849
            AASD  QLKSAREDIRE+LK+T+CHPI+VRLGWHD+GTYDKNIEEWP+RGGA+ SLRF+ EL H ANAGL+NALKLIQPIKDKY G+TYADLFQLASATAIEEAGGPKIPMKYGRVDV+  EQCP EGRLP AGP  PA+HLR VFYRMGL+DKEIVALSGAHT
Sbjct:   84 AASDAAQLKSAREDIREILKTTYCHPIMVRLGWHDSGTYDKNIEEWPQRGGADGSLRFDAELSHGANAGLINALKLIQPIKDKYPGITYADLFQLASATAIEEAGGPKIPMKYGRVDVTAAEQCPPEGRLPDAGPRVPADHLREVFYRMGLDDKEIVALSGAHT 247          
BLAST of FC878007 vs. ExPASy Swiss-Prot
Match: APX7_ORYSJ (Probable L-ascorbate peroxidase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=APX7 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.041e-76
Identity = 134/172 (77.91%), Postives = 151/172 (87.79%), Query Frame = 1
Query:  334 STVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHT 849
            S    +   AS   +LK+AREDIRELLK+T CHPILVRLGWHD+GTYDKNI+EWP+RGGAN SLRF+VELKH ANAGLVNALKL+QPIKDKY  ++YADLFQLASATAIEEAGGPKIPM YGR+DV+GPEQCP EG+LP AGP +PA+HLR VFYRMGL+DKEIV LSGAHT
Sbjct:   77 SASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAGPSAPADHLRKVFYRMGLDDKEIVVLSGAHT 248          
BLAST of FC878007 vs. ExPASy Swiss-Prot
Match: APX5_ORYSJ (Probable L-ascorbate peroxidase 5, chloroplastic OS=Oryza sativa subsp. japonica GN=APX5 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.104e-69
Identity = 131/176 (74.43%), Postives = 147/176 (83.52%), Query Frame = 1
Query:  325 RGYSTVPTTKCAASDPD-QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHT 849
            R  S+  +   AA D + +L++ARED+R+LLKS  CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRF VEL HAAN GL+ AL L+ PIK KY+GVTYAD+FQLASATAIEEAGGPKIPM YGR DV+  E+CP EGRLPAA PPSPAEHLR VFYRMGL+DKEIVALSGAHT
Sbjct:   35 RPASSSSSAAAAAGDVEAELRAAREDVRQLLKSNPCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFGVELVHAANKGLLKALFLVIPIKSKYAGVTYADIFQLASATAIEEAGGPKIPMIYGRADVADGEECPPEGRLPAADPPSPAEHLREVFYRMGLSDKEIVALSGAHT 210          
BLAST of FC878007 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.931e-38
Identity = 85/158 (53.80%), Postives = 105/158 (66.46%), Query Frame = 1
Query:  376 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHT 849
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K K+  +TYADL+QLA   A+E  GGP I    GR D S     PEEGRLP A     A HLR VFYRMGL+DK+IVALSG HT
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSS---DSPEEGRLPDA--KKGAAHLREVFYRMGLSDKDIVALSGGHT 162          
BLAST of FC878007 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.530e-38
Identity = 84/158 (53.16%), Postives = 105/158 (66.46%), Query Frame = 1
Query:  376 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHT 849
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K ++  +TYADL+QLA   A+E  GGP I    GR D S     PEEGRLP A     A HLR VFYRMGL+DK+IVALSG HT
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSS---DSPEEGRLPDA--KKGAAHLREVFYRMGLSDKDIVALSGGHT 162          
BLAST of FC878007 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.455e-37
Identity = 84/158 (53.16%), Postives = 104/158 (65.82%), Query Frame = 1
Query:  376 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHT 849
            Q+  AR  +R L+ S  C PI++RL WHDAGTYD N     + GGAN S+R+E E  H +NAGL  A+ L++PIK K   +TYADL+QLA   A+E  GGP +    GR D S    CP EGRLP A     A HLR++FYRMGL+DK+IVALSG HT
Sbjct:   13 QVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNT----KTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSS---VCPREGRLPDA--KKGALHLRDIFYRMGLSDKDIVALSGGHT 161          
BLAST of FC878007 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.505e-34
Identity = 79/158 (50.00%), Postives = 101/158 (63.92%), Query Frame = 1
Query:  376 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHT 849
            ++  AR ++R L+ +  C PI++RL WHDAGTYD       + GG N S+R E E  H AN+GL  AL L + +K K+  +TYADL+QLA   A+E  GGP I    GR D      CP+EGRLP A      +HLR+VFYRMGL+DK+IVALSG HT
Sbjct:   13 EITKARRELRSLIANKNCAPIMLRLAWHDAGTYDAQ----SKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGVKAKHPKITYADLYQLAGVVAVEVTGGPDIVFVPGRKD---SNVCPKEGRLPDA--KQGFQHLRDVFYRMGLSDKDIVALSGGHT 161          
The following BLAST results are available for this feature:
BLAST of FC878007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
APXS_ARATH1.485e-8280.77L-ascorbate peroxidase S, chloroplastic/mitochondr... [more]
APXT_ARATH1.536e-7977.17L-ascorbate peroxidase T, chloroplastic OS=Arabido... [more]
APX6_ORYSJ3.784e-7882.56Probable L-ascorbate peroxidase 6, chloroplastic O... [more]
APX8_ORYSJ2.453e-7783.54Probable L-ascorbate peroxidase 8, chloroplastic O... [more]
APX7_ORYSJ6.041e-7677.91Probable L-ascorbate peroxidase 7, chloroplastic O... [more]
APX5_ORYSJ1.104e-6974.43Probable L-ascorbate peroxidase 5, chloroplastic O... [more]
APX3_ORYSJ2.931e-3853.80Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI6.530e-3853.16Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ1.455e-3753.16Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ARATH1.505e-3450.00L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878007 ID=FC878007; Name=FC878007; organism=Citrus clementina; type=EST; length=851bp
CGCGCGCGTGCTTGCCATTGGGCCTCGTAATCCAAAACAAAAGGAGCAAA
AAGCGAACGCTTGAAAAAGAACCAAATGGCAGCTCGGCCAGCGTCACTGA
CACAACAACAGATACGACTGCAATCAAAATCACAATCACCGATGGCTTCC
TCTTTGAGCACCGCCGCTTCTTCTCGCCTTCTTTGCTCCACCACCGCCGC
CGCCGCAGCTGCTAAGCTTTCTTTCTCTTCCGCTTCTTCACTCTCTTTCT
CTCTCTCCTCTTCTTCCTCCCTCAAATGCCTCAGATTCTCTCCTCTCATC
AGCCAGAGGAGATCGTCTGTGAACAGAGGATATAGCACCGTACCTACGAC
GAAATGTGCGGCGTCGGATCCTGATCAGTTGAAGAGTGCTAGAGAAGATA
TTAGGGAGCTTCTCAAGTCTACATTTTGCCATCCTATTTTGGTTCGTCTA
GGATGGCATGATGCTGGTACTTATGACAAGAACATTGAGGAGTGGCCTCG
AAGGGGAGGAGCTAATGCAAGTCTTAGATTTGAGGTTGAGCTAAAACACG
CAGCCAATGCTGGGCTTGTGAATGCATTGAAACTGATTCAACCTATCAAG
GACAAATATTCCGGTGTCACATATGCAGACTTATTCCAGTTGGCTAGCGC
TACTGCTATAGAGGAAGCCGGGGGTCCTAAGATCCCAATGAAGTATGGAA
GAGTGGATGTCTCAGGACCTGAGCAGTGCCCTGAAGAAGGAAGGCTTCCT
GCTGCTGGGCCTCCATCACCTGCTGAACATTTAAGAAATGTCTTTTATAG
AATGGGATTAAATGACAAGGAAATAGTTGCCTTATCTGGTGCACACACAG
T
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