FC878017

Overview
NameFC878017
Unique NameFC878017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length889
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12451 contig Ccv1_Contig12451:33..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878017 vs. ExPASy Swiss-Prot
Match: ARK3_ARATH (Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.699e-50
Identity = 125/259 (48.26%), Postives = 151/259 (58.30%), Query Frame = 2
Query:  134 NYRNGTSNRSSLAKTDRPLSVNSNSKPAVKSRSFPASGPRKSSPASLGSAAVPKDYXXXXXXXXXXXXXXT---RNAEEMLADADFGDCVXXXXXXXXXXXXXNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKLILLDHLEKKIRLLVE*WSVLWKIFWPEFLWTQILSQYPICSSIWRPY----RTFLIPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLXEAHRFA 889
            +YRNGT  RSSL       + +   K +VKS+S      RKSSPA+LG  +                       RN EE++ADADF DCV             NNWD +T+EFDEVLTE+ASQKRVY+ VAKPVVE VLDGYNGT+MAYGQTGTGK   L  L ++    V    ++ +    + L    L    I  S  + Y    +  L P+NDNI+I EDPK GDVSLPG TLVEIRDQ SF+ELL+L EAHRFA
Sbjct:   11 SYRNGTQ-RSSLRTQSSASTSSGGQKASVKSKSVL----RKSSPAALGGGSSKSGGGGDAGVPGRVRVAVRLRPRNGEELIADADFADCVELQPELKRLKLRKNNWDTDTFEFDEVLTEYASQKRVYEVVAKPVVEGVLDGYNGTIMAYGQTGTGKTYTLGQLGEED---VADRGIMVRAM-EDILAEVSLETDSISVSYLQLYMETVQDLLDPSNDNIAIVEDPKNGDVSLPGATLVEIRDQQSFLELLQLGEAHRFA 260          
BLAST of FC878017 vs. ExPASy Swiss-Prot
Match: ARK2_ORYSJ (Armadillo repeat-containing kinesin-like protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0137100 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.022e-46
Identity = 102/185 (55.14%), Postives = 122/185 (65.95%), Query Frame = 2
Query:  347 RNAEEMLADADFGDCVXXXXXXXXXXXXXNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKLILLDHLEKKIR----LLVE*WSVLWKIFWPEFLWTQILSQYPICSSIWRPYRTFLIPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLXEAHRFA 889
            RNA+E+ ADADFGDCV             NNW++ETYEFDEVLTEFASQKRVY+ VAKPVVESVL+GYNGTVMAYGQTGTGK   L  L ++      ++V     +     PE   T  +S            +  L P NDNI+I EDP+TGDVSLPG T+VE+RDQ SFV+LL++ EAHR A
Sbjct:   64 RNADELAADADFGDCVELQPELKRLKLRKNNWESETYEFDEVLTEFASQKRVYEVVAKPVVESVLEGYNGTVMAYGQTGTGKTFTLGRLGEEDTAARGIMVRAMEDILADITPE---TDTVS-VSYLQLYMEMIQDLLDPVNDNIAIVEDPRTGDVSLPGATVVEVRDQKSFVDLLRIGEAHRVA 244          
BLAST of FC878017 vs. ExPASy Swiss-Prot
Match: ARK2_ARATH (Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis thaliana GN=ARK2 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 3.485e-45
Identity = 126/267 (47.19%), Postives = 152/267 (56.93%), Query Frame = 2
Query:  122 AMANNYRNGTSNRSSLAKTDRPLSVNSNSKPAVKSRSFP------ASGPRKSSPASLGSA--AVPKDYXXXXXXXXXXXXXXTRNAEEMLADADFGDCVXXXXXXXXXXXXXNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKLILLDHL---EKKIRLLVE*WSVLWKIFWPEFLWTQILSQYPICSSIWRPYRTFLIPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLXEAHRFA 889
            AMA++ RNG    S      RP+S  ++S   ++S SF       A  PR+SS AS+G+A   VP                  RNA+E +ADADF DCV             NNWD ETYEFDEVLTE ASQKRVY+ VAKPVVESVL+GYNGTVMAYGQTGTGK   L  L   +   R ++     +  I     L T  +S            +  L PTNDNI+I EDP+TGDVSLPG T VEIR+Q +F+ELL+L E HR A
Sbjct:    2 AMASS-RNGAVRGSM-----RPVSGANSSN--LRSSSFKSRIPSSAPAPRRSSSASIGAADNGVP-------GRVRVAVRLRPRNADESVADADFADCVELQPELKRLKLRKNNWDTETYEFDEVLTEAASQKRVYEVVAKPVVESVLEGYNGTVMAYGQTGTGKTFTLGRLGDEDTAARGIMV--RSMEDIIGGTSLDTDSIS-VSYLQLYMETIQDLLDPTNDNIAIVEDPRTGDVSLPGATHVEIRNQQNFLELLQLGETHRVA 250          
BLAST of FC878017 vs. ExPASy Swiss-Prot
Match: ARK1_ORYSJ (Armadillo repeat-containing kinesin-like protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0152900 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.794e-33
Identity = 96/240 (40.00%), Postives = 118/240 (49.17%), Query Frame = 2
Query:  209 KPAVKSRSFPASGPRKS-SPASLGSAAVPKDYXXXXXXXXXXXXXXTRNAEEMLADADFGDCVXXXXXXXXXXXXXNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKLILLDHLEK--------KIRLLVE*WSVLWKIFWPEFLWTQILSQYPICSSIWRPY----RTFLIPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLXEAHRFA 889
            +PA +SRS      R S SP+    AA   D                +N+E++   ADF  CV             NNW  E+Y FDEV +E ASQKRVY+ VAKPVVESVL+GYNGTVMAYGQTGTGK   +  L           +R L    SV+             L    +  S  + Y    +  L P   NI I EDPKTG+VSLPG   VEIRD     +LL++ E +R A
Sbjct:   20 RPAGRSRSVAPPSRRPSPSPSRARPAAADNDGGSDSCRVRVAVRLRPKNSEDLAHGADFDSCVELQPECKKLKLKKNNWSCESYRFDEVFSENASQKRVYEVVAKPVVESVLEGYNGTVMAYGQTGTGKTYTVGRLGNDDPSEGGIMVRALEHILSVM------------SLETDSVAISFLQLYLESVQDLLAPEKTNIPIVEDPKTGEVSLPGAAKVEIRDLEHVFQLLQIGEMNRHA 247          
BLAST of FC878017 vs. ExPASy Swiss-Prot
Match: ARK1_ARATH (Armadillo repeat-containing kinesin-like protein 1 OS=Arabidopsis thaliana GN=ARK1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.997e-33
Identity = 98/268 (36.57%), Postives = 139/268 (51.87%), Query Frame = 2
Query:  110 LSVEAMANNYRNGTSNRSSLAKTDRPLSVNSNSKPAVKSRSFPASGPRKSSPASLGSAAVPKDYXXXXXXXXXXXXXXTRNAEEMLADADFGDCVXXXXXXXXXXXXXNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKLILLDHLEKKIRLLVE*WSVLWKIFWPEFLWTQILSQYPICSSIWRPY--------RTFLIPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLXEAHRFA 889
            L++ A  +    G ++ S L   DRP + +S+S  +V S S P++  R+S      S +   D                RN EE+++DADF D V             NNW++E+Y+FDEV T+ ASQKRVY+ VAKPVVE VL GYNGT+MAYGQTGTGK   +  + K             +      L   +L+      S+   Y        +  L P  +NISI ED KTG+VS+PG T+V I+D   F+++L++ E +R A
Sbjct:   40 LNLPARTSIVAPGIAHSSRLK--DRPSASSSSSSSSV-SASSPST--RRSGTPVRRSQSKDFDDDNDPGRVRVSVRVRPRNGEELISDADFADLVELQPEIKRLKLRKNNWNSESYKFDEVFTDTASQKRVYEGVAKPVVEGVLSGYNGTIMAYGQTGTGKTYTVGKIGKD--------DAAERGIMVRALEDILLNASSASISVEISYLQLYMETIQDLLAPEKNNISINEDAKTGEVSVPGATVVNIQDLDHFLQVLQVGETNRHA 294          
BLAST of FC878017 vs. ExPASy Swiss-Prot
Match: KIF5C_MOUSE (Kinesin heavy chain isoform 5C OS=Mus musculus GN=Kif5c PE=1 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.036e-11
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 2
Query:  455 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGK 592
            Y FD VL    +Q++VY A AK +V+ VL+GYNGT+ AYGQT +GK
Sbjct:   47 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGK 92          

HSP 2 Score: 32.3426 bits (72), Expect = 1.036e-11
Identity = 18/47 (38.30%), Postives = 28/47 (59.57%), Query Frame = 1
Query:  622 DPATRGIMVRAMEDILAGV-SLDTD---SVTVSYLQLYMETIQDLLD 750
            DP   GI+ R   DI   + S+D +    + VSY ++Y++ I+DLLD
Sbjct:  102 DPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLD 148          
BLAST of FC878017 vs. ExPASy Swiss-Prot
Match: KIF5C_HUMAN (Kinesin heavy chain isoform 5C OS=Homo sapiens GN=KIF5C PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.036e-11
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 2
Query:  455 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGK 592
            Y FD VL    +Q++VY A AK +V+ VL+GYNGT+ AYGQT +GK
Sbjct:   47 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGK 92          

HSP 2 Score: 32.3426 bits (72), Expect = 1.036e-11
Identity = 18/47 (38.30%), Postives = 28/47 (59.57%), Query Frame = 1
Query:  622 DPATRGIMVRAMEDILAGV-SLDTD---SVTVSYLQLYMETIQDLLD 750
            DP   GI+ R   DI   + S+D +    + VSY ++Y++ I+DLLD
Sbjct:  102 DPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLD 148          
BLAST of FC878017 vs. ExPASy Swiss-Prot
Match: KIF5C_RAT (Kinesin heavy chain isoform 5C (Fragment) OS=Rattus norvegicus GN=Kif5c PE=1 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.081e-11
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 2
Query:  455 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGK 592
            Y FD VL    +Q++VY A AK +V+ VL+GYNGT+ AYGQT +GK
Sbjct:   47 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGK 92          

HSP 2 Score: 32.3426 bits (72), Expect = 1.081e-11
Identity = 18/47 (38.30%), Postives = 28/47 (59.57%), Query Frame = 1
Query:  622 DPATRGIMVRAMEDILAGV-SLDTD---SVTVSYLQLYMETIQDLLD 750
            DP   GI+ R   DI   + S+D +    + VSY ++Y++ I+DLLD
Sbjct:  102 DPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLD 148          
BLAST of FC878017 vs. ExPASy Swiss-Prot
Match: KINH_RAT (Kinesin-1 heavy chain OS=Rattus norvegicus GN=Kif5b PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.344e-11
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 2
Query:  446 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGK 592
            ++ Y FD V     SQ++VY   AK +V+ VL+GYNGT+ AYGQT +GK
Sbjct:   43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGK 91          

HSP 2 Score: 33.113 bits (74), Expect = 1.344e-11
Identity = 18/47 (38.30%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  622 DPATRGIMVRAMEDILAGV-SLDTD---SVTVSYLQLYMETIQDLLD 750
            DP   GI+ R ++DI   + S+D +    + VSY ++Y++ I+DLLD
Sbjct:  101 DPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLD 147          
BLAST of FC878017 vs. ExPASy Swiss-Prot
Match: KINH_MOUSE (Kinesin-1 heavy chain OS=Mus musculus GN=Kif5b PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.344e-11
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 2
Query:  446 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGK 592
            ++ Y FD V     SQ++VY   AK +V+ VL+GYNGT+ AYGQT +GK
Sbjct:   43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGK 91          

HSP 2 Score: 33.113 bits (74), Expect = 1.344e-11
Identity = 18/47 (38.30%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  622 DPATRGIMVRAMEDILAGV-SLDTD---SVTVSYLQLYMETIQDLLD 750
            DP   GI+ R ++DI   + S+D +    + VSY ++Y++ I+DLLD
Sbjct:  101 DPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLD 147          
The following BLAST results are available for this feature:
BLAST of FC878017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ARK3_ARATH4.699e-5048.26Armadillo repeat-containing kinesin-like protein 3... [more]
ARK2_ORYSJ7.022e-4655.14Armadillo repeat-containing kinesin-like protein 2... [more]
ARK2_ARATH3.485e-4547.19Armadillo repeat-containing kinesin-like protein 2... [more]
ARK1_ORYSJ1.794e-3340.00Armadillo repeat-containing kinesin-like protein 1... [more]
ARK1_ARATH3.997e-3336.57Armadillo repeat-containing kinesin-like protein 1... [more]
KIF5C_MOUSE1.036e-1156.52Kinesin heavy chain isoform 5C OS=Mus musculus GN=... [more]
KIF5C_HUMAN1.036e-1156.52Kinesin heavy chain isoform 5C OS=Homo sapiens GN=... [more]
KIF5C_RAT1.081e-1156.52Kinesin heavy chain isoform 5C (Fragment) OS=Rattu... [more]
KINH_RAT1.344e-1151.02Kinesin-1 heavy chain OS=Rattus norvegicus GN=Kif5... [more]
KINH_MOUSE1.344e-1151.02Kinesin-1 heavy chain OS=Mus musculus GN=Kif5b PE=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA85CC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878017 ID=FC878017; Name=FC878017; organism=Citrus clementina; type=EST; length=889bp
TTAGCTGAGCAAAAGAAAAATTCACGAAAACATTTTCTTGGAAAATCAAA
CCAACAAACCAGCAACTAGACTTTTCACTCTTCAACAATGCGGTATTGAA
TTTGAAATCCTTTCAGTTGAAGCAATGGCTAATAATTACAGGAATGGCAC
TTCTAACAGAAGCTCCCTCGCCAAGACTGATAGGCCTCTTTCAGTGAATT
CCAATTCAAAGCCAGCCGTCAAGTCCAGGTCATTTCCGGCTTCTGGTCCT
CGCAAGAGCAGTCCGGCATCTCTCGGCTCCGCCGCCGTCCCCAAAGACTA
TGCTGGAGTTCCTGGGAGAGTTAGGGTGGCTGTAAGATTGCGAACGCGTA
ATGCTGAGGAAATGTTGGCAGATGCTGATTTTGGCGATTGTGTTGAATTA
CTGCCCGAGCTTAAAAGGTTGAAACTTCGGAAGAACAATTGGGATGCTGA
GACCTATGAGTTTGATGAAGTGCTTACTGAGTTTGCATCACAAAAACGTG
TTTATCAAGCTGTTGCGAAGCCTGTTGTGGAGAGTGTTCTTGATGGCTAC
AATGGAACAGTCATGGCATATGGGCAGACAGGAACTGGTAAACTTATACT
CTTGGACCACTTGGAGAAGAAGATCCGGCTACTCGTGGAATAATGGTCCG
TGCTATGGAAGATATTTTGGCCGGAGTTTCTTTGGACACAGATTCTGTCA
CAGTATCCTATTTGCAGCTCTATATGGAGACCATACAGGACCTTCTTGAT
CCCTACCAATGATAACATTTCTATTGCAGAAGATCCAAAAACTGGAGATG
TTTCGCTACCTGGGGTTACTCTAGTTGAAATTAGAGATCAACATAGTTTT
GTGGAACTACTAAAATTANGAGAAGCTCACCGCTTTGCT
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