FC878020

Overview
NameFC878020
Unique NameFC878020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8953 contig Ccv1_Contig8953:113..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878020 vs. ExPASy Swiss-Prot
Match: Y4967_ARATH (Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670 PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.876e-93
Identity = 165/246 (67.07%), Postives = 199/246 (80.89%), Query Frame = 1
Query:   58 MATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAVSVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXXXXXXXXXXXXWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFL 795
            MATE+Q  IR G++G ADIARK+SRAI LAPNA +S VASRSLEKA  FA ANN+P   K++GSYE+LL+D +IDA+Y+PLPTS+HV+WA+  A+K KH+L+EKP+A+NV EFD I++ACE NGVQ+MDGTMWVHNPRTA +KEF+SD +RFGQL+T+ SCFSFAGD +FLKNDIRVKP            WY IR+ L AN++ELPKTV A  G VLNEAGVILSCGASL W+DGR AT  CSFL
Sbjct:    1 MATETQ--IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHNPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPGLDGLGALGDAGWYAIRATLLANNFELPKTVTAFPGAVLNEAGVILSCGASLSWEDGRTATIYCSFL 244          
BLAST of FC878020 vs. ExPASy Swiss-Prot
Match: YMO1_RHIME (Uncharacterized oxidoreductase ORF334 OS=Rhizobium meliloti PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.749e-19
Identity = 58/171 (33.92%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   82 IRFGIIGAADIA-RKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAVSVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG-DAEFLKNDIRV 588
            +RFGIIG A IA  K+  ++  A    + A+ASR L++A   A A  F    + YGSY+ +L D +I+AVY+PLP  +HV WA+  A+  KH+L EKP+AL+V E   +++  +  G ++ +  M   +P+  ++ + V+  +  G++R +   F+    D + + ND  +
Sbjct:    4 VRFGIIGTAAIAVEKVIPSMLSAEGLEVVAIASRDLDRAR--AAATRFGI-GRSYGSYDEILADPEIEAVYIPLPNHLHVHWAIRAAEAGKHVLCEKPLALDVEELSRLIDCRDRTGRRIQEAVMIRAHPQWDEIFDIVASGE-IGEVRAIQGVFTEVNLDPKSIVNDASI 170          
BLAST of FC878020 vs. ExPASy Swiss-Prot
Match: DHDH_DANRE (Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Danio rerio GN=dhdh PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.565e-13
Identity = 48/160 (30.00%), Postives = 83/160 (51.88%), Query Frame = 1
Query:   79 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAVSVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFA 552
            A+R+GI  A  I+   + A+   P     + AVA+R L  A  FA+ ++ P   + YGSYE L +D +ID VY+      H++  +     KK++L EKP+A+N+ E   +++A   + V LM+       P + ++   +S     GQ++ + + F  A
Sbjct:    2 ALRWGICSAGKISHDFTVALRTLPAEQHQVVAVAARELAHAQEFAQKHSIP---RAYGSYEELAEDPEIDVVYVGTIHPHHLRVGLLFMNAKKNVLCEKPLAMNLKEVQQMISAARRSDVFLMEAVWTRFFPASLEISRLLSQ-NAVGQVKLVRADFGAA 157          
BLAST of FC878020 vs. ExPASy Swiss-Prot
Match: DHDH_XENTR (Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Xenopus tropicalis GN=dhdh PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.461e-12
Identity = 44/124 (35.48%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   79 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAVSVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 444
            A ++GI  A  I+     A++  P  +  + A+A+R LEKA NFA+ +N P   K YGSYE L  D DID +Y+     +H    +   Q  K++L EKP+A+N A+   ++    +  V LM+
Sbjct:    2 ATKWGICSAGKISNDFVVALSTLPAVDHQVVAIAARDLEKAKNFAQNHNIP---KAYGSYEELAKDPDIDVIYVGAIHPVHRDVVLMCLQNGKNILCEKPLAMNAAQVQELIATARKFNVFLME 122          
BLAST of FC878020 vs. ExPASy Swiss-Prot
Match: DHDH_XENLA (Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Xenopus laevis GN=dhdh PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   79 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAVSVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 444
            A ++GI     I+     A++  P  +  + AVA+R LEKA NFA+ +N P   K YGSYE L  D DID +Y+     +H    +   Q  K++L EKP+A+N A+   ++ A  +  V LM+
Sbjct:    2 ATKWGICSTGRISNDFVVALSTLPAVDHQVVAVAARDLEKAKNFAQIHNIP---KAYGSYEELAKDPDIDVIYVGAIHPVHRDVVLMCLQNGKNVLCEKPLAMNSAQVRELIAAARKFNVFLME 122          
BLAST of FC878020 vs. ExPASy Swiss-Prot
Match: YGJR_ECOLI (Uncharacterized oxidoreductase ygjR OS=Escherichia coli (strain K12) GN=ygjR PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.110e-11
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   82 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAVSVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 444
            IRF +IG   I R+   A   +    L+AV SRSLE+A +FA  N+F  +  ++ S EA+ +   IDAVY+  P S+H          K +++ EKP+A N+AE D  +    EN V L +
Sbjct:    2 IRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFA--NDFSVE-HLFTSLEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKINVICEKPLASNLAEVDAAIACARENQVVLFE 119          
BLAST of FC878020 vs. ExPASy Swiss-Prot
Match: YULF_BACSU (Uncharacterized oxidoreductase yulF OS=Bacillus subtilis GN=yulF PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 44/136 (32.35%), Postives = 67/136 (49.26%), Query Frame = 1
Query:   82 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAVSVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKE 489
            IRF IIG   I  +   +     +  L+AV SRS E+A  FA  +N    A  +   + +      DAVY+  P ++H + AV      KH+L EKP A N  E + +++A + NGV LM+       P   ++K+
Sbjct:    2 IRFAIIGTNWITDRFLESAADIEDFQLTAVYSRSAERAGEFAAKHNA---AHAFSDLQEMAASDCFDAVYIASPNALHKEQAVLFMNHGKHVLCEKPFASNTKETEEMISAAKANGVVLMEAMKTTFLPNFKELKK 134          
BLAST of FC878020 vs. ExPASy Swiss-Prot
Match: DHDH_MOUSE (Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Mus musculus GN=Dhdh PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 49/159 (30.82%), Postives = 74/159 (46.54%), Query Frame = 1
Query:   79 AIRFGIIGAADIARKLSRAITLAPNAV--LSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAVSVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 549
            A+R+GI+ A  IA   +  ++  P++   + AVA+R L +A  FA+  N P   K YGSYE L  D +++  Y+      H    +      K +L EKPM +N AE   ++      GV LM+       P    ++E V      G LR   + F F
Sbjct:    2 ALRWGIVSAGLIANDFTTVLSSLPSSEHQVVAVAARDLNRAEEFAQKFNIP---KAYGSYEELAKDPNVEVAYIATQHPQHKPAVLLCLAAGKAVLCEKPMGVNAAEVREMVAKARSQGVFLMEAIWSRFFPAMEALRE-VLVQGTIGDLRVARAEFGF 156          
The following BLAST results are available for this feature:
BLAST of FC878020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y4967_ARATH2.876e-9367.07Uncharacterized oxidoreductase At4g09670 OS=Arabid... [more]
YMO1_RHIME2.749e-1933.92Uncharacterized oxidoreductase ORF334 OS=Rhizobium... [more]
DHDH_DANRE8.565e-1330.00Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS... [more]
DHDH_XENTR1.461e-1235.48Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS... [more]
DHDH_XENLA4.251e-1236.29Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS... [more]
YGJR_ECOLI2.110e-1137.19Uncharacterized oxidoreductase ygjR OS=Escherichia... [more]
YULF_BACSU3.598e-1132.35Uncharacterized oxidoreductase yulF OS=Bacillus su... [more]
DHDH_MOUSE6.138e-1130.82Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE07RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878020 ID=FC878020; Name=FC878020; organism=Citrus clementina; type=EST; length=797bp
CAGACCACATACGCAGGTGCGCGGCCGGCCCCCACGATTACGATTGCGCT
GAGACAAATGGCGACAGAATCCCAAGCAGCAATCCGCTTCGGCATAATCG
GCGCCGCGGACATAGCACGCAAGCTCTCACGCGCCATAACTCTGGCTCCA
AACGCCGTCCTATCAGCCGTCGCGAGCCGCTCTCTCGAGAAAGCCACTAA
CTTCGCCAAAGCCAACAACTTCCCACCCGATGCCAAAGTCTACGGCTCCT
ACGAGGCCTTGCTCGATGACAAGGATATCGACGCCGTCTACTTGCCGTTA
CCGACGTCGATGCATGTCAAATGGGCCGTCTCGGTCGCCCAAAAAAAGAA
GCATCTGTTGATGGAGAAGCCCATGGCTTTGAACGTAGCGGAGTTTGATG
TGATCTTGAATGCTTGCGAGGAAAATGGGGTGCAGTTAATGGATGGTACC
ATGTGGGTGCATAATCCCAGGACGGCTCAAATGAAAGAGTTTGTTTCTGA
TCCGCAGCGTTTTGGCCAGCTCAGAACGATGCACAGCTGCTTCTCATTTG
CTGGTGATGCTGAATTCCTCAAAAATGACATTCGTGTTAAGCCGGATCTT
GATGGTCTTGGTGCTCTTGGTGATGCTGGTTGGTATGGCATCCGGTCAAT
CCTGTGGGCAAATGATTATGAGTTGCCAAAAACGGTTATAGCCATGCATG
GCCCTGTTCTCAATGAAGCAGGGGTGATTTTATCTTGCGGAGCTTCTCTA
CATTGGGATGATGGGAGAGTAGCAACATTCAGTTGCTCCTTTTTAGC
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