FC878021

Overview
NameFC878021
Unique NameFC878021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14191 contig Ccv1_Contig14191:24..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878021 vs. ExPASy Swiss-Prot
Match: ALG13_HUMAN (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo sapiens GN=ALG13 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.395e-29
Identity = 67/163 (41.10%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  304 RIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGMDLESLLPYQPGDATPVAKLINRFLG 792
            + VFVTVGTT FD L+  V   +  Q++   GY  L++Q+GRGT VP     E     +D + +  S+ + ++ A LVISHAG+GS  ETL  GKPL+VV+NE LM+NHQ ELA++L    HL+     +L  ++  MDL +L  Y PG     +  +++ +G
Sbjct:    2 KCVFVTVGTTSFDDLIACVSAPDSLQKIESLGYNRLILQIGRGTVVPEPFSTES--FTLDVYRYKDSLKEDIQKADLVISHAGAGSCLETLEKGKPLVVVINEKLMNNHQLELAKQLHKEGHLFYCTCSTLPGLLQSMDLSTLKCYPPGQPEKFSAFLDKVVG 162          
BLAST of FC878021 vs. ExPASy Swiss-Prot
Match: ALG13_MOUSE (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus musculus GN=Alg13 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.496e-29
Identity = 70/160 (43.75%), Postives = 96/160 (60.00%), Query Frame = 1
Query:  313 FVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGMDLESLLPYQPGDATPVAKLINRFLG 792
            FVTVGTT FD LV  V   +  Q L   GY HL++Q+GRGT VP     E     +D + +  S+ + L+ A LVISHAG+GS  E+L  GKPL+VVVNE LM+NHQ ELA++L    HL+     +L  ++  MDL +L  Y PG     +  +++ +G
Sbjct:    5 FVTVGTTSFDELVARVVANDCVQILESLGYNHLVLQVGRGTVVPKPFRTES--FTLDVYRYKDSLKEDLQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYCTCSTLPGLLQSMDLSTLKCYPPGQPEKFSAFLDKVVG 162          
BLAST of FC878021 vs. ExPASy Swiss-Prot
Match: ALG13_RAT (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Rattus norvegicus GN=Alg13 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.670e-28
Identity = 70/160 (43.75%), Postives = 95/160 (59.38%), Query Frame = 1
Query:  313 FVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGMDLESLLPYQPGDATPVAKLINRFLG 792
            FVTVGTT FD LV  V   +  Q L   GY HL++Q+GRGT VP     E     +D + +  S+ + L+ A LVISHAG+GS  E+L  GKPL+VVVNE LM+NHQ ELA++L    HL+      L  ++  MDL +L  Y PG     +  +++ +G
Sbjct:    5 FVTVGTTSFDDLVARVVANDTVQILKSLGYNHLVLQIGRGTVVPEPFSTEP--FTLDVYRYKESLKEDLQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYCTCSMLPGLLQSMDLSTLKCYPPGQPEKFSAFLDKVVG 162          
BLAST of FC878021 vs. ExPASy Swiss-Prot
Match: ALG13_SCHPO (UDP-N-acetylglucosamine transferase subunit alg13 OS=Schizosaccharomyces pombe GN=alg13 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.977e-21
Identity = 61/157 (38.85%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  313 FVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG--TYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGMDLESLLPYQPGDATPVAKLI 777
            FVTVG+T FD L++AV   E +  L + G   L++Q G+G   +   KS+    ++  DY   +  I  ++  AS+VISHAG+GSI +TLR GK L+VV NE LMDNHQ ELA +LA+  +L      +L + +  +  + L P+   D +   K++
Sbjct:    4 FVTVGSTQFDDLIRAVLKPEFQHCLVKHGINQLIVQYGKGKQAFGDPKSVAGLTILGFDY---APEIESYIHDASIVISHAGAGSILQTLRSGKRLLVVPNESLMDNHQVELATKLASMNYLVTCSTSNLVEGLEELYPKILTPFPKSDCSTFQKVM 157          
BLAST of FC878021 vs. ExPASy Swiss-Prot
Match: ALG13_YARLI (UDP-N-acetylglucosamine transferase subunit ALG13 OS=Yarrowia lipolytica GN=ALG13 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.185e-19
Identity = 49/122 (40.16%), Postives = 77/122 (63.11%), Query Frame = 1
Query:  307 IVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL 672
            ++  T GT  F+AL++ V + E    L++ G++ + +Q GRG         ++G+M++  F ++  +A  +  A LVISHAG+GS+ + LR GK  +VVVN  LMDNHQ E+AEEL  ++HL
Sbjct:   30 VLVTTGGTVPFEALIELVLSHESITTLSQLGFSKMRVQYGRGNRHIFTKHHKEGVMSITGFEYTDDLAGEMSRAHLVISHAGTGSVLDALRIGKHPVVVVNSKLMDNHQIEIAEELFRKRHL 151          
BLAST of FC878021 vs. ExPASy Swiss-Prot
Match: ALG13_ASPFU (UDP-N-acetylglucosamine transferase subunit alg13 OS=Aspergillus fumigatus GN=alg13 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.466e-16
Identity = 56/154 (36.36%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  304 RIVFVTVGTTC-FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV-------------PTKSLGEDGLMAVDY-----FTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVI 708
            ++ FVTVG T  F+ LV+A         L   GY+HLL+Q G+   +             P + +   G    ++     F  + +     RS  LVISHAGSG+I E LR G PLIVV N  L DNHQ ELA +L  + ++  +H Q+L Q +
Sbjct:    5 KVCFVTVGATASFEELVRAALDPSFVTALEENGYSHLLVQYGKNAVIYENFLKQYPPERRPWRRINISGFSFHEHGLGGDFALAQADISKGRSGGLVISHAGSGTILEVLRMGIPLIVVPNPSLQDNHQEELARQLQKQGYVVASHYQNLCQAL 158          
BLAST of FC878021 vs. ExPASy Swiss-Prot
Match: ALG13_ASHGO (UDP-N-acetylglucosamine transferase subunit ALG13 OS=Ashbya gossypii GN=ALG13 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.793e-14
Identity = 63/193 (32.64%), Postives = 90/193 (46.63%), Query Frame = 1
Query:  280 TRDSVSLKRIVFVTVGTTC-FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK-----------SLGEDGLMAVDY------------FTFSSSIADHL-RSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC--AHPQSLHQVIAGMDLESLLPYQPGDATPVAKLI 777
            T+  +   + V VT G T  F  LV AV    V  EL + G++ +++Q GRG     +           +   +GL   D             F F + +   +  SA+LV+SHAG+GSI + LR  KPLIV VNE L+DNHQ ++A    A  HL+   A    L   +A    E+L P  P      A+L+
Sbjct:    5 TKSKMEGPKTVVVTCGATVPFPGLVNAVLDRRVLAELAQCGFSRVMVQYGRGFAAEFERQVGAAGAVRAACDAEGLEGCDAHAWRWQGLEIIGFAFHAQMESLIGTSAALVVSHAGTGSILDALRQQKPLIVCVNEALLDNHQEQIARRFEALGHLWAIRADVDELAGALARSTRETLAPLPPAYKQGFAELL 197          
BLAST of FC878021 vs. ExPASy Swiss-Prot
Match: ALG13_YEAST (UDP-N-acetylglucosamine transferase subunit ALG13 OS=Saccharomyces cerevisiae GN=ALG13 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.897e-14
Identity = 61/180 (33.89%), Postives = 88/180 (48.89%), Query Frame = 1
Query:  301 KRIVFVTVGTTC-FDALVKAVDTLEVKQELTRRGYTHLLIQMGRG------------------TYVPTKSLG----------EDGLMAVDYFTFSSSIADHLRSAS-LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGM---DLESLLPY 741
            ++ +FVT G T  F  LV  V + E  QEL + G+  L+IQ GR                     +P    G           +G + V  F FS+ +   +R  S LVISHAG+GSI ++LR  KPLIV VN+ LMDNHQ ++A++     +++   P     +IAG+     E L P+
Sbjct:    6 EKALFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAPTET-GLIAGLRASQTEKLKPF 184          
BLAST of FC878021 vs. ExPASy Swiss-Prot
Match: ALG13_KLULA (UDP-N-acetylglucosamine transferase subunit ALG13 OS=Kluyveromyces lactis GN=ALG13 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 56/158 (35.44%), Postives = 76/158 (48.10%), Query Frame = 1
Query:  298 LKRIVFVTVGTTC-FDALVKAVDTLEVKQELTRRGYTHLLIQMGRG--------------TYVPTKSLGEDGLMAVDY-------------FTFSSSIADHL-RSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAH 684
            +   V VT G T  F  LV+ V    V ++L   GY  ++IQ GRG               +   KS G   L  ++              F FS  I   +  +  LVISHAG+GSI ++LR GK LIVVVN+ LMDNHQ  +A++   +K L+  H
Sbjct:    1 MNNTVLVTCGATVSFPRLVETVLDRSVTEKLKVLGYGRIVIQYGRGFSDTFLQLVEKHLGLFTEKKSCGIKVLDKIENLKVISVDGIEICGFEFSHDIEKLIANNIDLVISHAGTGSILDSLRVGKKLIVVVNDTLMDNHQQLIADKFEQQKLLWSVH 158          
The following BLAST results are available for this feature:
BLAST of FC878021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ALG13_HUMAN4.395e-2941.10UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_MOUSE7.496e-2943.75UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_RAT1.670e-2843.75UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_SCHPO1.977e-2138.85UDP-N-acetylglucosamine transferase subunit alg13 ... [more]
ALG13_YARLI9.185e-1940.16UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_ASPFU1.466e-1636.36UDP-N-acetylglucosamine transferase subunit alg13 ... [more]
ALG13_ASHGO1.793e-1432.64UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_YEAST8.897e-1433.89UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_KLULA2.862e-1235.44UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA85CC12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878021 ID=FC878021; Name=FC878021; organism=Citrus clementina; type=EST; length=869bp
CAGAACGCCCAGGAAAAACTCTAATTTTCAATGCAAAACACACGCTGCCG
TTGCAAACAGGCTTAACGCCCGCCCCTTGACACCGCTGCTTTCTGTTACT
GCTGCCGCGTGACGCGTGCTGTTTGTTGGATCGCTCACCACGGTTGTTGC
CAGTCAATCGCCGACTGTGCTTGCTATTTTGCCAAGCTACGGCTTCACGG
CCGTCATCAAAAGCTTAGTGGTGGTGTACATTTTGGACAAAACCGAATCA
TAGATAACGAGAAATTCGAGATGGGAGATACTAGGGATAGTGTGAGCTTG
AAGAGAATTGTGTTCGTAACAGTCGGAACAACATGTTTTGATGCTCTTGT
GAAAGCGGTGGATACTTTAGAAGTAAAACAAGAGTTGACAAGAAGAGGAT
ATACCCATCTTCTCATTCAAATGGGTCGAGGAACCTATGTACCTACTAAG
TCCCTTGGAGAAGACGGCCTCATGGCTGTAGACTACTTTACTTTTTCGTC
AAGCATTGCAGACCATCTAAGGTCTGCATCTCTTGTAATCAGTCATGCCG
GGTCAGGGAGCATATTTGAGACCTTACGGCATGGTAAACCTTTGATAGTG
GTGGTGAATGAAGACTTAATGGACAATCATCAGAGTGAGCTAGCAGAAGA
ACTAGCAGCGAGGAAGCATTTATATTGTGCTCATCCTCAATCCCTTCATC
AGGTTATAGCTGGTATGGATTTGGAGTCTCTCCTACCATACCAACCTGGT
GATGCCACACCAGTTGCCAAGCTTATAAACAGATTTCTAGGTTTCCCTGA
TGATTGACGAGATTACAGACTTAATGTTGATTAGAGAAACAACTAGGCAG
GTGTTATACTTTTTTTTTT
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