FC878029

Overview
NameFC878029
Unique NameFC878029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10484 contig Ccv1_Contig10484:1..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2)

HSP 1 Score: 311.612 bits (797), Expect = 3.833e-85
Identity = 160/215 (74.42%), Postives = 171/215 (79.53%), Query Frame = 2
Query:  278 ADISKRXXXXXXXXXXXXXXXXXXXXXXXNAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLS---NTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913
            A+ISKR                       NA+IDADMNN+GKGRLKYLLQQTELF+HFAK D S+SQKKAKGRGRHASK+T             DGL+   NTRL+TQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL YLHE+RGI GPHMVVAPKSTLGNWMNEIRRFCPVLRAVK LGNPEERRHIRE+LLVAG+
Sbjct:   74 AEISKREKARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKYLLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEEDEEYLKEEEDGLTGSGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGK 288          

HSP 2 Score: 25.409 bits (54), Expect = 3.833e-85
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  909 GKFDVCVTSF 938
            GKFD+CVTSF
Sbjct:  287 GKFDICVTSF 296          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 3.838e-79
Identity = 144/186 (77.42%), Postives = 160/186 (86.02%), Query Frame = 2
Query:  365 NAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSN---TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913
            NAA+DADMNN+GKGRLKYLLQQTE+F+HFAKG+QS  +KK +GRGRHASK+T             D L+    TRL++QPSCI+GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNW+ EI+RFCP+LRAVK LGNPEER HIRENLL  G+
Sbjct:  146 NAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQS-KEKKPRGRGRHASKMTEEEEDEEYLKEEEDALAGSGGTRLLSQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWIKEIQRFCPILRAVKFLGNPEERNHIRENLLQPGK 330          

HSP 2 Score: 25.7942 bits (55), Expect = 3.838e-79
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  909 GKFDVCVTSF 938
            GKFDVCVTSF
Sbjct:  329 GKFDVCVTSF 338          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.870e-36
Identity = 87/194 (44.85%), Postives = 116/194 (59.79%), Query Frame = 2
Query:  374 IDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGR-------------HASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913
            I+AD + R      +LL+QTE+F+HF   + + S  K KGR +             H  + T                   R    P+ I+ G+MRDYQ+ GLNW+I LYENGINGILADEMGLGKTLQTISLLGYL  F+   GPH+V+ PKSTL NW+NE +++CP LRAV ++G+ + R     ++L+ GE
Sbjct:   39 IEADRSRR----FDFLLKQTEIFTHFMT-NSAKSPTKPKGRPKKIKDKDKEKDVADHRHRKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGE 227          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.442e-36
Identity = 88/189 (46.56%), Postives = 115/189 (60.85%), Query Frame = 2
Query:  407 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913
            R +YLL+QTELF+HF    A+   ++  K   GR              G +  + T                +  TR    PS ++ GK+RDYQ+ GLNWLI LYENGINGILADEMGLGKTLQTISLLGY+  +R I GPHMV+ PKSTL NWM+E +R+ P LR+V ++G+ E+R     ++L+ GE
Sbjct:   91 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGE 279          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.441e-36
Identity = 87/189 (46.03%), Postives = 115/189 (60.85%), Query Frame = 2
Query:  407 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913
            R +YLL+QTELF+HF    A+   ++  K   GR              G +  + T                +  TR    PS ++ GK+RDYQ+ GLNWLI LYENGINGILADEMGLGKTLQTISLLGY+  +R I GPHMV+ PKSTL NWM+E +++ P LR+V ++G+ E+R     ++L+ GE
Sbjct:   90 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGE 278          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.311e-33
Identity = 83/189 (43.92%), Postives = 110/189 (58.20%), Query Frame = 2
Query:  407 RLKYLLQQTELFSHFAKGDQSAS------QKKAKGRGRHASKLTXXXXXXXXXXXXXDG-----LSNTRLVTQ--------PSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913
            R ++LL+QTELF+HF +     S       K A+ R +   K +                    LS +R  +         PS ++G  +RDYQ+ GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGYL  +R I GPHMV+ PKSTL NWMNE +R+ P LR +  +G+ + R     + ++ GE
Sbjct:   98 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGE 286          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 7.354e-33
Identity = 84/189 (44.44%), Postives = 112/189 (59.26%), Query Frame = 2
Query:  407 RLKYLLQQTELFSHF----AKGDQSASQKKAKGRGR-----HASKLTXXXXXXXXXXXXXDG--LSNTRLVTQ--------PSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913
            R ++LL+QTELF+HF    A+   ++      GR R       S ++             D   LS +R  +         PS ++G  +RDYQ+ GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGYL  +R I GPHMV+ PKSTL NWMNE +R+ P LR +  +G+ + R     + ++ GE
Sbjct:   94 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.197e-28
Identity = 75/195 (38.46%), Postives = 107/195 (54.87%), Query Frame = 2
Query:  407 RLKYLLQQTELFSH-FAKGDQSAS-----QKKAKGR--------GRHASKLTXXXXXXXXXXXXXDGLSNTRLVT---QPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGEV*CLCNKF 937
            R + LLQ+TE FSH  + GD   +       K +GR        G H  + T             D + +  LV     P  I+ G+MRDYQ+ GLNWL  L  N INGILADEMGLGKTLQTIS++GY+  ++    PH+V+ PKSTL NW NE +++CP + AV ++G+   R  +  ++++  +    C  +
Sbjct:   48 RFERLLQKTENFSHCLSSGDAKLATGAPVDTKKRGRPSKKNGIDGDHRHRKTEQEEDEEMVA---DAIKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCCTTY 239          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.215e-27
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 2
Query:  572 NTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            N+  +TQP  +  ++++YQL GL WL  LYE GINGILADEMGLGKT+Q+ISLL YL E   + GP +V+AP STL NW  E+ RF P L+A+   G+P++R  +R+
Sbjct:  857 NSVTITQPKMLMAQLKEYQLKGLTWLGNLYEQGINGILADEMGLGKTIQSISLLAYLAEHHNLWGPFLVIAPASTLHNWQQELARFVPRLKALPYWGSPKDRETLRK 963          
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.072e-27
Identity = 54/103 (52.43%), Postives = 77/103 (74.76%), Query Frame = 2
Query:  584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892
            ++QP+ +  K+++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ +   GN ++R+ +R+
Sbjct:  788 ISQPTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAKDRKILRK 890          
The following BLAST results are available for this feature:
BLAST of FC878029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
ISW2_ARATH3.833e-8574.42Putative chromatin-remodeling complex ATPase chain... [more]
ISW2_ORYSJ3.838e-7977.42Probable chromatin-remodeling complex ATPase chain... [more]
ISWI_DROME1.870e-3644.85Chromatin-remodeling complex ATPase chain Iswi OS=... [more]
SMCA5_HUMAN2.442e-3646.56SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA5_MOUSE5.441e-3646.03SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA1_MOUSE4.311e-3343.92Probable global transcription activator SNF2L1 OS=... [more]
SMCA1_HUMAN7.354e-3344.44Probable global transcription activator SNF2L1 OS=... [more]
ISW1_CAEEL3.197e-2838.46Chromatin-remodeling complex ATPase chain isw-1 OS... [more]
INO80_CRYNE1.215e-2753.27Putative DNA helicase INO80 OS=Cryptococcus neofor... [more]
INO80_EMENI2.072e-2752.43Putative DNA helicase ino80 OS=Emericella nidulans... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878029 ID=FC878029; Name=FC878029; organism=Citrus clementina; type=EST; length=938bp
AAAAAAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCTA
AACCCTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCC
AGTTCGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGA
GGAGGAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACG
ATAACTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTT
GAAGAGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAA
GCAGAGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAAC
TATTGGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGG
AAGGGCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTT
TGCGAAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGAC
GCCATGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAG
GAAGAAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTG
TATTCAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTA
TACGGTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGT
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAAGTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGGAAGTTTGATGTCTGTGTAACAAGTTTT
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