FC878029
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2) HSP 1 Score: 311.612 bits (797), Expect = 3.833e-85 Identity = 160/215 (74.42%), Postives = 171/215 (79.53%), Query Frame = 2 Query: 278 ADISKRXXXXXXXXXXXXXXXXXXXXXXXNAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLS---NTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913 A+ISKR NA+IDADMNN+GKGRLKYLLQQTELF+HFAK D S+SQKKAKGRGRHASK+T DGL+ NTRL+TQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL YLHE+RGI GPHMVVAPKSTLGNWMNEIRRFCPVLRAVK LGNPEERRHIRE+LLVAG+ Sbjct: 74 AEISKREKARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKYLLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEEDEEYLKEEEDGLTGSGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGK 288 HSP 2 Score: 25.409 bits (54), Expect = 3.833e-85 Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 909 GKFDVCVTSF 938 GKFD+CVTSF Sbjct: 287 GKFDICVTSF 296
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2) HSP 1 Score: 291.197 bits (744), Expect = 3.838e-79 Identity = 144/186 (77.42%), Postives = 160/186 (86.02%), Query Frame = 2 Query: 365 NAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSN---TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913 NAA+DADMNN+GKGRLKYLLQQTE+F+HFAKG+QS +KK +GRGRHASK+T D L+ TRL++QPSCI+GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNW+ EI+RFCP+LRAVK LGNPEER HIRENLL G+ Sbjct: 146 NAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQS-KEKKPRGRGRHASKMTEEEEDEEYLKEEEDALAGSGGTRLLSQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWIKEIQRFCPILRAVKFLGNPEERNHIRENLLQPGK 330 HSP 2 Score: 25.7942 bits (55), Expect = 3.838e-79 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 909 GKFDVCVTSF 938 GKFDVCVTSF Sbjct: 329 GKFDVCVTSF 338
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.870e-36 Identity = 87/194 (44.85%), Postives = 116/194 (59.79%), Query Frame = 2 Query: 374 IDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGR-------------HASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913 I+AD + R +LL+QTE+F+HF + + S K KGR + H + T R P+ I+ G+MRDYQ+ GLNW+I LYENGINGILADEMGLGKTLQTISLLGYL F+ GPH+V+ PKSTL NW+NE +++CP LRAV ++G+ + R ++L+ GE Sbjct: 39 IEADRSRR----FDFLLKQTEIFTHFMT-NSAKSPTKPKGRPKKIKDKDKEKDVADHRHRKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGE 227
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.442e-36 Identity = 88/189 (46.56%), Postives = 115/189 (60.85%), Query Frame = 2 Query: 407 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913 R +YLL+QTELF+HF A+ ++ K GR G + + T + TR PS ++ GK+RDYQ+ GLNWLI LYENGINGILADEMGLGKTLQTISLLGY+ +R I GPHMV+ PKSTL NWM+E +R+ P LR+V ++G+ E+R ++L+ GE Sbjct: 91 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGE 279
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 5.441e-36 Identity = 87/189 (46.03%), Postives = 115/189 (60.85%), Query Frame = 2 Query: 407 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913 R +YLL+QTELF+HF A+ ++ K GR G + + T + TR PS ++ GK+RDYQ+ GLNWLI LYENGINGILADEMGLGKTLQTISLLGY+ +R I GPHMV+ PKSTL NWM+E +++ P LR+V ++G+ E+R ++L+ GE Sbjct: 90 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGE 278
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 4.311e-33 Identity = 83/189 (43.92%), Postives = 110/189 (58.20%), Query Frame = 2 Query: 407 RLKYLLQQTELFSHFAKGDQSAS------QKKAKGRGRHASKLTXXXXXXXXXXXXXDG-----LSNTRLVTQ--------PSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913 R ++LL+QTELF+HF + S K A+ R + K + LS +R + PS ++G +RDYQ+ GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGYL +R I GPHMV+ PKSTL NWMNE +R+ P LR + +G+ + R + ++ GE Sbjct: 98 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGE 286
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 7.354e-33 Identity = 84/189 (44.44%), Postives = 112/189 (59.26%), Query Frame = 2 Query: 407 RLKYLLQQTELFSHF----AKGDQSASQKKAKGRGR-----HASKLTXXXXXXXXXXXXXDG--LSNTRLVTQ--------PSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGE 913 R ++LL+QTELF+HF A+ ++ GR R S ++ D LS +R + PS ++G +RDYQ+ GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGYL +R I GPHMV+ PKSTL NWMNE +R+ P LR + +G+ + R + ++ GE Sbjct: 94 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 3.197e-28 Identity = 75/195 (38.46%), Postives = 107/195 (54.87%), Query Frame = 2 Query: 407 RLKYLLQQTELFSH-FAKGDQSAS-----QKKAKGR--------GRHASKLTXXXXXXXXXXXXXDGLSNTRLVT---QPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRENLLVAGEV*CLCNKF 937 R + LLQ+TE FSH + GD + K +GR G H + T D + + LV P I+ G+MRDYQ+ GLNWL L N INGILADEMGLGKTLQTIS++GY+ ++ PH+V+ PKSTL NW NE +++CP + AV ++G+ R + ++++ + C + Sbjct: 48 RFERLLQKTENFSHCLSSGDAKLATGAPVDTKKRGRPSKKNGIDGDHRHRKTEQEEDEEMVA---DAIKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCCTTY 239
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.215e-27 Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 2 Query: 572 NTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 N+ +TQP + ++++YQL GL WL LYE GINGILADEMGLGKT+Q+ISLL YL E + GP +V+AP STL NW E+ RF P L+A+ G+P++R +R+ Sbjct: 857 NSVTITQPKMLMAQLKEYQLKGLTWLGNLYEQGINGILADEMGLGKTIQSISLLAYLAEHHNLWGPFLVIAPASTLHNWQQELARFVPRLKALPYWGSPKDRETLRK 963
BLAST of FC878029 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 2.072e-27 Identity = 54/103 (52.43%), Postives = 77/103 (74.76%), Query Frame = 2 Query: 584 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKVLGNPEERRHIRE 892 ++QP+ + K+++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E I GP +V+AP STL NW EI +F P ++ + GN ++R+ +R+ Sbjct: 788 ISQPTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAKDRKILRK 890 The following BLAST results are available for this feature:
BLAST of FC878029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878029 ID=FC878029; Name=FC878029; organism=Citrus clementina; type=EST; length=938bpback to top |