FC878031

Overview
NameFC878031
Unique NameFC878031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878031_ssr123 microsatellite FC878031_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878031_ssr630 microsatellite FC878031_ssr630:630..641. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878031_ssr671 microsatellite FC878031_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3333 contig Ccv1_Contig3333:56..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.148e-96
Identity = 171/206 (83.01%), Postives = 183/206 (88.83%), Query Frame = 3
Query:   12 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 629
            MVSGSGIC+KRVVVDARHHMLGRLAS+ AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            YEGVP PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERA V YER+KQL KLRVKAEK AEE+LG QL+I+AP+KY
Sbjct:    1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 7.440e-96
Identity = 167/206 (81.07%), Postives = 183/206 (88.83%), Query Frame = 3
Query:   12 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 629
            MVSGSGICAKRVVVDARHHMLGRLASV+AK+LLNGQ +VVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EGVP PYDK KRMV+PDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERAQ  YER+KQL+KLR KAEK AEE+LG QL+++AP+KY
Sbjct:    1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 8.226e-95
Identity = 168/206 (81.55%), Postives = 181/206 (87.86%), Query Frame = 3
Query:   12 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 629
            MVSGSGICAKRVVVD RHHMLGRLAS  AKELLNGQ+VVVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EG+P PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+QV YER+KQL KLR KAEK AEERLG QL+++AP+KY
Sbjct:    1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 6.963e-94
Identity = 166/206 (80.58%), Postives = 180/206 (87.38%), Query Frame = 3
Query:   12 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 629
            MVSGSGIC+KRVVVDARHHM GRLAS++AKELLNGQ VVVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EGVP PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+Q  YER+KQL KLR KAEK AEE+LG QL+++A IKY
Sbjct:    1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 8.512e-92
Identity = 164/206 (79.61%), Postives = 183/206 (88.83%), Query Frame = 3
Query:   12 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 629
            MVSGSGI AKRVVVDARHHMLGRLAS++AKELLNGQKVV+VR EEICISGGLVRQKMKY+RFLRKRMNTKPSHGPIH  AP+KI WRT+RGMIPHKT            YEG+P P+DK KR+V+PDALKVLRLQKGHKYCLLG+LSSEVGWNYYDTIKELEKKRKER+QV YER+KQL KLRVKAE+ A+E+LG QL+I+AP+KY
Sbjct:    1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 7.967e-90
Identity = 159/206 (77.18%), Postives = 182/206 (88.35%), Query Frame = 3
Query:   12 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 629
            MVSGSGICAK VVVDARHHMLGRLAS+LAKELL+GQ+VVVVRCEEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++ILWRTIRGMIPHKT            +EGVP PYD+ KRMVIPDALKVLRLQ GHKYCLLGRLS EVGW+++DTI ELE+KRK +AQV+YERRKQLAKLR KA + AE++L P++E++A +KY
Sbjct:    1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.791e-57
Identity = 110/184 (59.78%), Postives = 132/184 (71.74%), Query Frame = 3
Query:   39 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEER 590
            K VVVD R H+LGRLA+ LAKELLNGQ+VV VR EEI ISG L R K+K+  FL+KRMNT P  GP HFR+PA+ILWRTIRGMIPHKT            +EGVP PYDK KRMVIP AL+VLRL+ G K+C+LGRL++EVGW + D +  LE+KRK ++   Y R+K L  LR KA  A   +
Sbjct:    4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASK 187          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 1.517e-56
Identity = 103/190 (54.21%), Postives = 139/190 (73.16%), Query Frame = 3
Query:   45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 614
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++G   E++
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 196          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 3.379e-56
Identity = 102/190 (53.68%), Postives = 138/190 (72.63%), Query Frame = 3
Query:   45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 614
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 196          
BLAST of FC878031 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 4.412e-56
Identity = 102/190 (53.68%), Postives = 138/190 (72.63%), Query Frame = 3
Query:   45 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 614
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 196          
The following BLAST results are available for this feature:
BLAST of FC878031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
R13A4_ARATH1.148e-9683.0160S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A1_ARATH7.440e-9681.0760S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A3_ARATH8.226e-9581.5560S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A2_ARATH6.963e-9480.5860S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
RL13A_LUPLU8.512e-9279.6160S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_PICMA7.967e-9077.1860S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_CYAPA1.791e-5759.7860S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_BOVIN1.517e-5654.2160S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_PONAB3.379e-5653.6860S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_HUMAN4.412e-5653.6860S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878031 ID=FC878031; Name=FC878031; organism=Citrus clementina; type=EST; length=893bp
TTTGCACGAAAATGGTGTCAGGTTCAGGGATCTGCGCGAAAAGAGTGGTG
GTGGACGCCAGGCACCACATGCTCGGCCGCCTTGCCTCCGTTTTGGCCAA
GGAGCTCTTGAACGGCCAGAAGGTCGTCGTCGTCCGGTGCGAGGAGATTT
GTATATCAGGTGGGCTTGTTAGGCAGAAGATGAAGTACATGAGGTTCTTG
AGAAAGAGGATGAACACTAAGCCTTCTCATGGTCCCATCCATTTTCGAGC
TCCTGCTAAGATCCTTTGGCGTACCATCCGTGGGATGATTCCCCACAAGA
CTAAGCGTGGAGCTGCAGCCCTTGCTCGTTTGAAGGCTTATGAAGGAGTT
CCTGCTCCATATGACAAGACAAAGAGGATGGTCATTCCTGATGCTCTCAA
GGTCTTGAGGCTTCAAAAAGGACACAAGTACTGCTTGTTGGGCAGGCTTT
CATCTGAAGTAGGATGGAACTATTATGACACCATTAAGGAGCTTGAGAAG
AAGAGAAAGGAGAGGGCCCAGGTAGCTTATGAGAGGAGGAAGCAGTTGGC
TAAATTGAGGGTCAAAGCTGAGAAGGCTGCCGAGGAGAGGCTTGGTCCCC
AGCTAGAAATCATTGCTCCCATCAAGTATTGATGATGATGATTCTAGAAA
TCATTGCTCCCATCAAGTATTGATGATGATGATTCGTAAAGAGTTTGTTT
TCCAAATGTTACATCTGAGAAGAGTTTGTTCCCATTATATTTTGTCTTCC
ATTTTGATATTGATGGATTATAGTTTAACTGTGGTAGTTTTGAAGTAGAT
GTTATGCTGTATGCAAACATACTTGTTGAAATTAGTTATTTTGGTTATCA
ATTTGCTCAATTTCATCACAAAGCTGAGATTATGTACTGTCTT
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