FC878033
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1) HSP 1 Score: 421.779 bits (1083), Expect = 2.686e-117 Identity = 205/287 (71.43%), Postives = 237/287 (82.58%), Query Frame = 3 Query: 57 AASDRTVLQF----GPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKLNTA 905 A S+ T+LQF +SA TS +TA++HPLVIFN+CDC+VRRPD AERVIGTLLGS+LPDGTVDIRNSY VPHNE SDQVA+DI+YHH ML SHLKVN +E IVGW+STG GV GGS+LIH+FY REVPNP+HLTVDTGF NGEGT+KA+VS NLSLGDRQL A FQEIP+DLRM++AERVGFD+LK+TSVDKLP+DLEGME+ MERLLTLIND+YKYVD V G+ PDN++GR +++ VASLPKL P FD LVN ITRTQLSLAEKLNTA Sbjct: 3 ATSEHTILQFVSPSSTASATTSVLTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVLKATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKLPPQVFDNLVNDSLQDQLLLLYLSSITRTQLSLAEKLNTA 289
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 4.089e-49 Identity = 99/263 (37.64%), Postives = 157/263 (59.70%), Query Frame = 3 Query: 123 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 896 ++HP+++ +I D Y RR + A RVIGTLLG+V +V++ N + VPHNE D+VA+D+E+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDT +NG ++KAYVS + + R + F + + + ER+G D++ T V L SDL+ + R+ ++ + +Y +D + G+ DN+VGR L V +PK+ P F+ ++N +T++Q++L EKL Sbjct: 97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 358
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 4.089e-49 Identity = 99/263 (37.64%), Postives = 157/263 (59.70%), Query Frame = 3 Query: 123 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 896 ++HP+++ +I D Y RR + A RVIGTLLG+V +V++ N + VPHNE D+VA+D+E+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDT +NG ++KAYVS + + R + F + + + ER+G D++ T V L SDL+ + R+ ++ + +Y +D + G+ DN+VGR L V +PK+ P F+ ++N +T++Q++L EKL Sbjct: 97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 358
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 4.089e-49 Identity = 99/263 (37.64%), Postives = 157/263 (59.70%), Query Frame = 3 Query: 123 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 896 ++HP+++ +I D Y RR + A RVIGTLLG+V +V++ N + VPHNE D+VA+D+E+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDT +NG ++KAYVS + + R + F + + + ER+G D++ T V L SDL+ + R+ ++ + +Y +D + G+ DN+VGR L V +PK+ P F+ ++N +T++Q++L EKL Sbjct: 93 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 354
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 5.340e-49 Identity = 99/263 (37.64%), Postives = 158/263 (60.08%), Query Frame = 3 Query: 123 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 896 ++HP+++ +I D Y RR + A RVIGTLLG+V +V++ N + VPHNE D+VA+D+E+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDTG ++G ++KAYVS + + R + F + + + ER+G D++ T V L SDL+ + R+ ++ + +Y +D + G+ DN+VGR L V +PK+ P F+ ++N +T++Q++L EKL Sbjct: 97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 358
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 8.525e-47 Identity = 105/272 (38.60%), Postives = 151/272 (55.51%), Query Frame = 3 Query: 111 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 896 N+T +VHP+V+F + D Y RR + RVIGTLLGSV G V++ N + VPH E DQV ++ Y M + KVNP E +VGW++TG VT S++IHE+Y RE NPVHLTVDT + G ++AYV + L + + F IP++L E E G +L+ T V P+ DL + ++L L++ I KYVDD + + PDN+VGR L + + S+P ++ F ++ N + +TQL L EKL Sbjct: 5 NLTVRVHPVVLFQVVDAYERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPIPVELTSYEPETFGLKLLQKT-VGVSPAHRPKTVPPMLDLAQISEASQKLQQLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNANVRNLLLVITLSQLIKTQLQLNEKL 274
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EIF3F_DICDI (Eukaryotic translation initiation factor 3 subunit F OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 3.240e-46 Identity = 104/271 (38.38%), Postives = 162/271 (59.78%), Query Frame = 3 Query: 108 SNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLG-DRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDK----LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKLN 899 S VT KVHP+VIFNI D Y+RR +RVIGTLLG DG ++IRN + V H+E ++Q+A+++EY ML HLK +P+E I+GW++TG + S I+ FY E+ N P+HLTVDTG N + AY++ NLSL + L + F ++PL++ EAE G + + T D+ L S+LE ++ + +L ++ I Y++ +G D +GR L++T+ +LPK + DK++N +TR+QL++A K++ Sbjct: 11 SQVTVKVHPVVIFNILDHYIRRNVGQDRVIGTLLG-FNNDGVLEIRNCFPVVHSE-TEQIAVEMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDTGLTNDTMGIHAYMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTSLLSELESLQGSLTKLDEMLESITSYIESVEKGEIQGDPRLGRFLAKTIQALPKANAQVMDKVINNSVKDLLMIVYLSSLTRSQLAVATKIS 279
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 5.526e-46 Identity = 103/272 (37.87%), Postives = 151/272 (55.51%), Query Frame = 3 Query: 111 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 896 N+T +VHP+V+F + D + RR ++ RVIGTLLGSV G V++ N + VPH E DQV ++ Y M + KVN E +VGW++TG VT S++IHE+Y RE NPVHLTVDT + G +++YV + L + + F IP++L E E G +L+ T V P+ DL + +L +L++ I KYVDD + + PDN+VGR L + + S+P +S F ++ N + +TQL L EKL Sbjct: 5 NLTVRVHPVVLFQVVDAFERRNAESHRVIGTLLGSV-EKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKT-VGVAPANRPKTVPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMSHEQFTQMFNANVRNLLMVITLSQLIKTQLQLNEKL 274
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 5.526e-46 Identity = 103/272 (37.87%), Postives = 151/272 (55.51%), Query Frame = 3 Query: 111 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 896 N+T +VHP+V+F + D + RR ++ RVIGTLLGSV G V++ N + VPH E DQV ++ Y M + KVN E +VGW++TG VT S++IHE+Y RE NPVHLTVDT + G +++YV + L + + F IP++L E E G +L+ T V P+ DL + +L +L++ I KYVDD + + PDN+VGR L + + S+P +S F ++ N + +TQL L EKL Sbjct: 5 NLTVRVHPVVLFQVVDAFERRNAESHRVIGTLLGSV-EKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKT-VGVAPANRPKTVPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMSHEQFTQMFNANVRNLLMVITLSQLIKTQLQLNEKL 274
BLAST of FC878033 vs. ExPASy Swiss-Prot
Match: EI3F1_DROGR (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila grimshawi GN=eIF3-S5-1 PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.426e-46 Identity = 103/271 (38.01%), Postives = 151/271 (55.72%), Query Frame = 3 Query: 111 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST---SVDKLPS------DLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 896 N+T +VHP+V+F + D + RR + RVIGTLLGSV G V++ N + VPH E DQV ++ Y M + KVN E +VGW++TG VT S++IHE+Y RE NPVHLTVDT + G ++AYV + L + + F IP++L E E G +L+ T S + P DL + ++L +L++ I KYVDD + + PDN+VGR L + + S+P ++ F ++ N + +TQL L EKL Sbjct: 5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAQRPKTVPPMLDLAQISEASQKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNANVRDLLMVITLSQLIKTQLQLNEKL 274 The following BLAST results are available for this feature:
BLAST of FC878033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878033 ID=FC878033; Name=FC878033; organism=Citrus clementina; type=EST; length=905bpback to top |