FC878035

Overview
NameFC878035
Unique NameFC878035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7883 contig Ccv1_Contig7883:1..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878035 vs. ExPASy Swiss-Prot
Match: VCX1_SCHPO (Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe GN=vcx1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 72/155 (46.45%), Postives = 106/155 (68.39%), Query Frame = 1
Query:  427 RKRLALMNLLGQPDRTKTDSSDLERSDTGDTKKRRPKI-SIVSQFKATILGSWVNVLLVCVPIGFALRYSHANGYAVFIVNFIAIIPLAAMLSFATEELALYVGETLGGLLNASFGNATELIVSIIALAQNKILIVQTSLIGSMLSNLLLVLGMC 888
            + RL  MN    P + + + + L  S+   +  R+  + ++V   K+ ++ S+ N++LV VPIG    +   N  +VFI+N +AIIPLA++LSFATE+L++  G TLG LLNASFGNA ELIV ++AL + ++ IVQ+SL+GS+LSNLLLV GMC
Sbjct:    9 KNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNVVGMTKSVLMSSYFNLMLVFVPIGLIAGWFEWNAKSVFILNMLAIIPLASLLSFATEQLSIISGPTLGALLNASFGNAIELIVGVLALKRGELRIVQSSLLGSILSNLLLVFGMC 163          
BLAST of FC878035 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.805e-26
Identity = 67/153 (43.79%), Postives = 98/153 (64.05%), Query Frame = 1
Query:  442 LMNLLGQP-DRTKTDSSDL-ERSDTGDTKKRRPKISIVSQFKATILGSWVNVLLVCVPIGFALRYSHANGYAVFIVNFIAIIPLAAMLSFATEELALYVGETLGGLLNASFGNATELIVSIIALAQNKILIVQTSLIGSMLSNLLLVLGMCFF 894
            L +LL Q  D  +T+++ L E+    + + + P+ S+V  FK  IL + +N+LL   P+   + Y   N    F+++ + I PLA  L +ATE+L+ Y G T+GGLLNA+FGN  ELI+SIIAL    I +VQ +L+GS+LSN+LLVLG  FF
Sbjct:   39 LKSLLEQETDSPQTNAASLMEQGSLRERRAKAPRNSVVQSFKIVILSNKLNLLLPFGPLAILVHYLTDNKGWFFLLSLVGITPLAERLGYATEQLSCYTGATVGGLLNATFGNVIELIISIIALKNGMIRVVQLTLLGSILSNILLVLGCAFF 191          
BLAST of FC878035 vs. ExPASy Swiss-Prot
Match: VCX1_YEAST (Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae GN=VCX1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.785e-26
Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 1
Query:  583 VNVLLVCVPIGFALRYSHANGYAVFIVNFIAIIPLAAMLSFATEELALYVGETLGGLLNASFGNATELIVSIIALAQNKILIVQTSLIGSMLSNLLLVLGMCF 891
            +N LLV VP+G    +   +    F+ NF+AIIPLAA+L+ ATEELA   G T+GGLLNA+FGNA ELIVSIIAL + ++ IVQ S++GS+LSNLLLVLG+CF
Sbjct:   40 LNFLLVFVPLGLIWGHFQLSHTLTFLFNFLAIIPLAAILANATEELADKAGNTIGGLLNATFGNAVELIVSIIALKKGQVRIVQASMLGSLLSNLLLVLGLCF 142          
BLAST of FC878035 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.161e-26
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 1
Query:  526 RRPKISIVSQFKATILGSWVNVLLVCVPIGFALRYSHANGYAVFIVNFIAIIPLAAMLSFATEELALYVGETLGGLLNASFGNATELIVSIIALAQNKILIVQTSLIGSMLSNLLLVLGMCFF 894
            + P  S++  FK  IL + +N+LL   P+   L Y   N   +F+++ + I PLA  L +ATE+LA Y G T+GGLLNA+FGN TELI+SI AL    I +VQ +L+GS+LSN+LLVLG  FF
Sbjct:   58 KTPNNSVLQSFKIVILSNKLNLLLPFGPLAILLHYLTDNKGWIFLLSLVGITPLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFF 180          
BLAST of FC878035 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.178e-24
Identity = 68/134 (50.75%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  496 ERSDTGDTKKRRPKISIVSQFKATILGSWVNVLLVCVPIGFALRYSHANGYA-VFIVNFIAIIPLAAMLSFATEELALYVGETLGGLLNASFGNATELIVSIIALAQNKILIVQTSLIGSMLSNLLLVLGMCFF 894
            E   TG +K RR   S+    +  IL + +NVLL   P+   L Y  AN    VF+ + I I PLA  L +ATE+LALY G T+GGLLNA+FGNATE+I+S+ AL    I +VQ SL+GS+LSN+LLVLG  FF
Sbjct:   49 ESLSTG-SKWRRALTSV----RVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFF 177          
BLAST of FC878035 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.625e-24
Identity = 63/150 (42.00%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  460 QPDRTKTDSSDLERSDTGDTK-----KRRPKISIVSQFKATILGSWVNVLLVCVPIGFALRYSHANGYAVFIVNFIAIIPLAAMLSFATEELALYVGETLGGLLNASFGNATELIVSIIALAQNKILIVQTSLIGSMLSNLLLVLGMCFF 894
            + D T+T  + L    +  T       + PK S+++  K  I  + +N+LL   P+   + Y   +   VF++  + I PLA  L +ATE+LA Y G T+GGLLNA+FGN TELI+SI AL    I +VQ +L+GS+LSN+LLVLG  FF
Sbjct:   31 EEDATQTKEASLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPLAILVHYMIDSKGWVFLLTLVGITPLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFF 180          
BLAST of FC878035 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.791e-23
Identity = 62/148 (41.89%), Postives = 93/148 (62.84%), Query Frame = 1
Query:  457 GQPDRTKTDSSDLERSDTGDTKKRRPKI--SIVSQFKATILGSWVNVLLVCVPIGFALRYSHANGYAVFIVNFIAIIPLAAMLSFATEELALYVGETLGGLLNASFGNATELIVSIIALAQNKILIVQTSLIGSMLSNLLLVLGMCFF 894
            G+     + SS  ++SD    +K   K   +I+S  +  ILG+ + +L + +P+       +     +F ++ I + PLA  +SF TE+LA Y G T+GGLLNA+ GNATELI++I+ALA NK+ +V+ SL+GS+LSNLLLVLG   F
Sbjct:   31 GRTAHNMSSSSLRKKSDLRLVQKVPCKTLKNILSNLQEVILGTKLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLF 178          
BLAST of FC878035 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.791e-23
Identity = 63/157 (40.13%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  424 PRKRLALMNLLGQPDRTKTDSSDLERSDTGDTKKRRPKISIVSQFKATILGSWVNVLLVCVPIGFALRYSHANGYAVFIVNFIAIIPLAAMLSFATEELALYVGETLGGLLNASFGNATELIVSIIALAQNKILIVQTSLIGSMLSNLLLVLGMCFF 894
            PR+R A  NL     R  +D+S L +      +      S+++     +L + + +L   V +  A  Y H     VF+++ I ++PLA  LSF TE++A Y G T+GGLLNA+FGN TE+I++++AL + KI +V+ SL+GS+LSNLLLVLG   F
Sbjct:   28 PRRRTA-HNLSSSSLRKSSDASLLHKVPCAALR------SLLANLNDVLLTTRLFLLFPAVLLAIAATYLHFGQVWVFVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLF 177          
BLAST of FC878035 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.951e-23
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 1
Query:  541 SIVSQFKATILGSWVNVLLVCVPIGFALRYSHANGYAVFIVNFIAIIPLAAMLSFATEELALYVGETLGGLLNASFGNATELIVSIIALAQNKILIVQTSLIGSMLSNLLLVLGMCFF 894
            S +   +  I  S +N+LL   P    L Y+ +    VF+ + + I PLA  L +ATE+LA+Y G T+GGLLNA+FGNATE+I++I AL    I +VQ SL+GS+LSN+LLV+G  FF
Sbjct:   39 SALRSIRIVIFTSKLNLLLPFGPASIILHYTTSRHGLVFLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFF 156          
BLAST of FC878035 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.441e-22
Identity = 62/149 (41.61%), Postives = 90/149 (60.40%), Query Frame = 1
Query:  454 LGQPDRTKTDSSDLERSDTGDTKKRRPK--ISIVSQFKATILGSWVNVLLVCVPIGFALRYSHANGYAVFIVNFIAIIPLAAMLSFATEELALYVGETLGGLLNASFGNATELIVSIIALAQNKILIVQTSLIGSMLSNLLLVLGMCFF 894
            LG+     + SS  ++SD    +K   K     +S  +  ILG+ + +L   +P      Y   +   +F ++ + + PLA  +SF TE+LA Y G TLGGLLNA+ GNATELI++I+AL  NK+ +V+ SL+GS+LSNLLLVLG   F
Sbjct:   30 LGRTAHNMSSSSLRKKSDLRVIQKVPYKGLKDFLSNLQEVILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLF 178          
The following BLAST results are available for this feature:
BLAST of FC878035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
VCX1_SCHPO1.437e-3046.45Vacuolar calcium ion transporter OS=Schizosaccharo... [more]
CAX6_ARATH2.805e-2643.79Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]
VCX1_YEAST4.785e-2660.19Vacuolar calcium ion transporter OS=Saccharomyces ... [more]
CAX5_ARATH8.161e-2648.78Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ORYSJ1.178e-2450.75Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX2_ARATH2.625e-2442.00Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX3_ARATH3.791e-2341.89Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1B_ORYSJ3.791e-2340.13Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX3_ORYSJ4.951e-2347.46Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX1_ARATH1.441e-2241.61Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA8CB05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA8CB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878035 ID=FC878035; Name=FC878035; organism=Citrus clementina; type=EST; length=894bp
CTTGTCAACATTAACGAAACCTTCTCAGACTCAATCAAGCATCAGGCCCG
GAACATTGCCTGGAGGTACAACGACGGCGAGTCCAACTACAACCCATTTG
CCAGACGTTCTCGGTCCTATGTTGGACGCCCCGAGGACGAGGAGAACAAC
CTGCAGCGCCGCCATACAGCCGACCAAGTCATGTCTGACAGCAGCATCAG
GCGCAACGACATGCGCAACGTAGACAATGCCGACTTTGCCTACCCACACC
ATGCCAACACAGCGCCGCCAGACTCGAGTGCTTCCTCCGACGCACCCACA
TCAAATGGAACTCTCGTCGGCCAATCAGACATCAAACCATCCAAGGAAAA
GGAAAGCATACCGCTGGACCGCGACAACTCTCGATCCATGTCTGAGAAGC
CTCACACCGAGTCCGAACACAAACCCCGTAAACGACTGGCTCTTATGAAC
TTGCTTGGCCAGCCCGACCGCACCAAGACCGACTCTTCCGACCTCGAACG
CTCAGATACTGGTGACACCAAGAAGAGACGACCCAAGATCAGTATCGTCA
GTCAGTTCAAGGCCACCATCCTGGGTTCATGGGTCAACGTCCTTCTGGTC
TGCGTGCCCATTGGTTTCGCCCTCAGATACTCGCACGCCAATGGTTATGC
TGTCTTCATTGTCAACTTCATCGCCATCATTCCCCTTGCCGCCATGCTGT
CCTTTGCTACTGAAGAACTCGCCTTGTATGTCGGAGAAACACTTGGAGGT
CTGCTCAACGCCAGTTTCGGAAACGCTACCGAACTAATCGTCAGTATCAT
CGCTCTGGCTCAAAACAAGATTCTCATTGTGCAAACATCCTTGATCGGAA
GTATGCTCTCCAACTTGCTTCTCGTCTTGGGTATGTGCTTCTTC
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