FC878040

Overview
NameFC878040
Unique NameFC878040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length865
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4467 contig Ccv1_Contig4467:1..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.508e-33
Identity = 70/109 (64.22%), Postives = 82/109 (75.23%), Query Frame = 2
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            S K IVLKS DGESFEVEEAVALES TI HM+EDDC DNG+PLPNVT KILAKV+EYCK+HVE  A++                 ++DLK+WD DF+K+DQATLF+LIL
Sbjct:    2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASK-------AEAVEGAATSDDDLKAWDADFMKIDQATLFELIL 103          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.111e-32
Identity = 71/107 (66.36%), Postives = 81/107 (75.70%), Query Frame = 2
Query:   50 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            KMI+LKS DGESFE+EEAVA++S TIKHMIEDDCADNGIPLPNVTG ILAKV+EYCKKHVE  A                    ++LK+WD++FVKVDQ TLFDLIL
Sbjct:    6 KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAA------EAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLIL 106          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.202e-32
Identity = 69/114 (60.53%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   38 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV---PATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            MS+ + I LKS DGE+FE++EAVALES TIKHMIEDDC DNGIPLPNVT KIL+KV+EYCK+HVE      T                  +EDLK+WD++F+KVDQ TLFDLIL
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLIL 114          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.229e-31
Identity = 70/106 (66.04%), Postives = 76/106 (71.70%), Query Frame = 2
Query:   50 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLI 367
            KMI+LKS DGESFEVEEAVA+ES TIKHMIEDDC DNGIPLPNVTG ILAKV+EYCKKHVE  A                     +LK+WD DFVKVD  TLFDL+
Sbjct:    6 KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAA------EAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLL 105          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 2
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            S KMIVL S DG+SFEVEEAVA++S TI HM+EDDC  +GIPL NV  KIL KV+EYCKKH    A                   EEDL +WD  F+ ++Q+T+F+LIL
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHVDEAN---------------PISEEDLNNWDEKFMDLEQSTIFELIL 95          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.111e-23
Identity = 58/110 (52.73%), Postives = 71/110 (64.55%), Query Frame = 2
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK-HVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            S KMIVL S DG+SFEVEEAVA++S TI HM+EDDC  +GIPL NV  KIL KV+EYCKK HV+                      EEDL  WD  F+ ++Q+T+F+LIL
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVD----------------EANPISEEDLNKWDEKFMDLEQSTIFELIL 95          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.361e-22
Identity = 57/109 (52.29%), Postives = 67/109 (61.47%), Query Frame = 2
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            S K I+LKS DG SFEVEE  A +  TI HM EDDC DNGIPLP VTGKIL  V+EYC KH  V A                   +EDLK WD +F++  Q+T+FDLI+
Sbjct:    2 STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKH-HVDAAN--------------PCSDEDLKKWDKEFMEKYQSTIFDLIM 95          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.322e-22
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   50 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKV--DQATLFDLIL 370
            KM++L S DGESF+VEEAVA++S TI HMIEDDC  NG+P+ NVTG IL+KV+EYCKKHV   +  +                +++LK WD +F+K     +TLFD++L
Sbjct:    3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTE--------------ESKDELKKWDAEFMKALEQSSTLFDVML 97          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.720e-21
Identity = 56/109 (51.38%), Postives = 67/109 (61.47%), Query Frame = 2
Query:   44 SPKMIVLKSCDGESFEVEEAVALE-STTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLI 367
            S K I+LKS DG SFEVEE  A +    I HM E+DC DNGIPLPNVTGKILA V+EYC KH  V A                   ++DLK WD +F++ D +T+FDLI
Sbjct:    2 STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKH-HVDAAN--------------PCSDDDLKKWDKEFMEKDTSTIFDLI 95          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.840e-19
Identity = 57/112 (50.89%), Postives = 68/112 (60.71%), Query Frame = 2
Query:   38 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLIL 370
            MSS K IVL S D ESFEVEEAVA +   I HMI+DDCAD  IPL NVTG ILA V+EYCKKHV +    D                + +L++WD +F+K  D  T+  LIL
Sbjct:    1 MSSNK-IVLTSSDDESFEVEEAVARKLKVIAHMIDDDCADKAIPLENVTGNILALVIEYCKKHV-LDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLIL 110          
The following BLAST results are available for this feature:
BLAST of FC878040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SKP1A_ARATH8.508e-3364.22SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH1.111e-3266.36SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1B_ARATH7.202e-3260.53SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
ASK3_ARATH1.229e-3166.04SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH1.231e-2353.21SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH6.111e-2352.73SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH1.361e-2252.29SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH2.322e-2249.54SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH5.720e-2151.38SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK16_ARATH1.840e-1950.89SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA8CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA8CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878040 ID=FC878040; Name=FC878040; organism=Citrus clementina; type=EST; length=865bp
AGACATAGCTAGATTTGTTTTCTTTCTTCTCGAAACGATGTCGTCTCCTA
AGATGATCGTACTCAAGAGCTGTGACGGCGAGTCGTTCGAGGTCGAGGAG
GCTGTCGCGCTTGAGTCGACGACCATCAAGCACATGATCGAGGACGACTG
CGCCGATAACGGCATCCCGTTACCGAACGTGACGGGCAAGATCCTGGCGA
AGGTGGTTGAGTATTGCAAGAAACACGTGGAGGTTCCTGCGACCCAGGAT
AGCAACAACAGCGGCGCCAACAGCAACGGTACTGCCACTAACGGTGGTGA
GGAGGATCTCAAAAGCTGGGACACTGACTTCGTCAAAGTTGACCAGGCCA
CTCTCTTCGATCTCATCCTGGTCGGTATTGTTTATCTCTTTGCTTGATCA
AAGTTAGGGTTTGAAATCCTAATATGAAAATTTTGGCTTTATCTCTTTTC
ATTCTCTAATACTGATTGCTTTGGGTAATATTGCCAATATTTTTTATGTT
AGGGTTTGTAAGGTATGTTTTTGTTGTGATCTTGCATCTCCTAATTGTTT
GCTCCGTCCGTAATTCTGCAATTATATTTTGTGATTTAGTGAGTTAATTA
GTATTTTACTTGCTCAAAAGCTTACGAATTTATGATGTTTTTCAAATCTG
ATTGCTGATAACAATTGTAGGACTTTGTAGTTAAGTGATATTGTTGTGGG
CACTGTCTTTATGGGTGTGATTCTAGGATCATTTTTATGAAGGAAATTGA
CCGTTCGTTTTGTGCTTGCATGCATGTTGTATTTCATGTATTCACACTCC
ACTTTGTGTTTAAGGTTTCCTGTTTTGTGCGATTGTCTCGTTTTGAAAAT
GCTTGCCGGTGGTAA
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