FC878044

Overview
NameFC878044
Unique NameFC878044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length961
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13707 contig Ccv1_Contig13707:266..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC_SOLTU (Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 558.14 bits (1437), Expect = 2.624e-158
Identity = 271/307 (88.27%), Postives = 289/307 (94.14%), Query Frame = 1
Query:   40 NIRDEARRRNVIYTHKFSAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGSYWKALFDSRVGKRTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFL*GVQMCKELGLVDRIPRLVCAQAAN 960
            NIR+EARR     +H FSA+YVPFNAGP+  E YSLDE+VYRS+SGGLLDVQHDM ALK +DG YW++LFDSRVGK TWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGK+FL M DLWVKHCGISHTGSFKDLGMTVLVSQVNRL+KM+KPV+GVGCASTGDTSAALSAYCASAG+PSIVFLPANKIS+AQLVQPIANGAFVLS+DTDFDGCMQLIREVT+ELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVP+WVIVPGGNLGNIYAF  G QMCKELGLVDRIPRLVCAQAAN
Sbjct:   58 NIREEARRH--CSSHNFSARYVPFNAGPNSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMHKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAAN 362          
BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC1_ARATH (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TS1 PE=1 SV=1)

HSP 1 Score: 555.058 bits (1429), Expect = 2.221e-157
Identity = 266/307 (86.64%), Postives = 287/307 (93.49%), Query Frame = 1
Query:   40 NIRDEARRRNVIYTHKFSAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGSYWKALFDSRVGKRTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFL*GVQMCKELGLVDRIPRLVCAQAAN 960
            NIRDEARR      + FSAKYVPFNA P  TESYSLDE+VYRS+SGGLLDV+HDM ALK +DG+YW+ LFDSRVGK TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGK+FL MNDLWVKHCGISHTGSFKDLGMTVLVSQVNRL+KM +PV+GVGCASTGDTSAALSAYCASAG+PSIVFLPANKIS+AQLVQPIANGAFVLS+DTDFDGCM+LIRE+T+ELPIYLANSLNSLRLEGQKTAAIEILQQFDW+VPDWVIVPGGNLGNIYAF  G +MC+ELGLVDRIPR+VCAQAAN
Sbjct:   63 NIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAAN 369          
BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC2_ARATH (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TS2 PE=1 SV=1)

HSP 1 Score: 548.51 bits (1412), Expect = 2.079e-155
Identity = 268/307 (87.30%), Postives = 283/307 (92.18%), Query Frame = 1
Query:   40 NIRDEARRRNVIYTHKFSAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGSYWKALFDSRVGKRTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFL*GVQMCKELGLVDRIPRLVCAQAAN 960
            NIRDEARRR        SA+YVPFNA PS TESYSLDE+VYRSQSG LLDVQHD  ALK YDG +W+ LFDSRVGK  WPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGK++LQMNDLWVKHCGISHTGSFKDLGM+VLVSQVNRL+KMNKPVIGVGCASTGDTSAALSAYCASAG+PSIVFLPA+KIS+AQLVQPIANGAFVLS+DTDFDGCM LIREVT+ELPIYLANSLNSLRLEGQKTAAIEILQQF+W+VPDWVIVPGGNLGNIYAF  G  MCKELGLVDRIPRLVCAQAAN
Sbjct:   55 NIRDEARRRPH-QLQNLSARYVPFNAPPSSTESYSLDEIVYRSQSGALLDVQHDFAALKRYDGEFWRNLFDSRVGKTNWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQYLQMNDLWVKHCGISHTGSFKDLGMSVLVSQVNRLRKMNKPVIGVGCASTGDTSAALSAYCASAGIPSIVFLPADKISMAQLVQPIANGAFVLSIDTDFDGCMHLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFNWQVPDWVIVPGGNLGNIYAFYKGFHMCKELGLVDRIPRLVCAQAAN 360          
BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC_METJA (Probable threonine synthase OS=Methanocaldococcus jannaschii GN=thrC PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.181e-47
Identity = 112/276 (40.58%), Postives = 164/276 (59.42%), Query Frame = 1
Query:  127 CTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGSYWKALFDSRVGKRTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFL*GVQMCKELGLVDRIPRLVCAQA 954
            C ++Y +DE++Y  + GGLL++ +D   +K         + + ++ KR      GVW   E+ LP  D   IVS  EG + L+      KE L + +L+VK+ G + TGSFKD GMTV V++ N L      V  VGCASTG+TSA+L+AY A +G   IV LP  K+++ +L Q +  GA V+ +  +FD  + +++++  E  IYL NS+N  RLEGQKT A EI  Q +W+VPD VIVP GN GNI A   G +  +  G++D +P++   QA
Sbjct:    8 CGKTYDVDEIIYTCECGGLLEIIYDYEEIKD-------KVSEEKLRKRE----IGVWRYLEY-LPVKDESKIVSLCEGGTPLYRCNNLEKE-LGIKELYVKNEGANPTGSFKDRGMTVGVTRANELG-----VEVVGCASTGNTSASLAAYSARSGKKCIVLLPEGKVALGKLAQAMFYGAKVIQVKGNFDDALDMVKQLAKEKLIYLLNSINPFRLEGQKTIAFEICDQLNWQVPDRVIVPVGNAGNISAIWKGFKEFEITGIIDELPKMTGIQA 265          
BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC_SYNY3 (Threonine synthase OS=Synechocystis sp. (strain PCC 6803) GN=thrC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.543e-36
Identity = 88/214 (41.12%), Postives = 129/214 (60.28%), Query Frame = 1
Query:  316 LPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFL*GVQMCKELGLVDRIPRLVCAQAA 957
            LP  D   +V+  EGN+ L  A    K   +   ++VK+ G++ TGSFKD GMT+ +S+        K VI   CASTG+TSAA +AY   AG+ + V +P   +++ +L Q +  GA V+++D +FD  +  +R+++   P+ L NS+N  RLEGQKTAA EI+     + PDW+ +P GN GNI A+  G    KELG  DR+PR++  QAA
Sbjct:   45 LPVSDQTPVVTLLEGNTPLIPAPAIAKRIGKDVRVFVKYDGLNPTGSFKDRGMTMAISKAKEAGA--KAVI---CASTGNTSAAAAAYARRAGLRAFVIIPDGYVALGKLGQALIYGAEVIAIDGNFDDALTTVRQLSEHYPVTLVNSVNPYRLEGQKTAAFEIVDVLG-QAPDWLCIPVGNAGNITAYWMGFCQYKELGKGDRLPRMMGFQAA 252          
BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC_MYCTU (Probable threonine synthase OS=Mycobacterium tuberculosis GN=thrC PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.481e-32
Identity = 90/229 (39.30%), Postives = 133/229 (58.08%), Query Frame = 1
Query:  274 WPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFL*GVQMCKELGLVDRIPRLVCAQAA 957
            WP   GV +     LP  D    V+  EG + L  A    K+      L V+  G++ TGSFKD GMT+ V+    L    + V+   CASTG+TSA+ +AY A AG+   V +P  KI++ +L Q + +GA ++ +D +FD C++L R++ ++ P I L NS+N +R+EGQKTAA EI+       PD   +P GN GNI A+  G     +LGL+D++PR++  QAA
Sbjct:   12 WP---GVIAAYRDRLPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVE--GLNPTGSFKDRGMTMAVTDA--LAHGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPTISLVNSVNPVRIEGQKTAAFEIVDVLG-TAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAA 229          
BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC_MYCBO (Probable threonine synthase OS=Mycobacterium bovis GN=thrC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.481e-32
Identity = 90/229 (39.30%), Postives = 133/229 (58.08%), Query Frame = 1
Query:  274 WPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFL*GVQMCKELGLVDRIPRLVCAQAA 957
            WP   GV +     LP  D    V+  EG + L  A    K+      L V+  G++ TGSFKD GMT+ V+    L    + V+   CASTG+TSA+ +AY A AG+   V +P  KI++ +L Q + +GA ++ +D +FD C++L R++ ++ P I L NS+N +R+EGQKTAA EI+       PD   +P GN GNI A+  G     +LGL+D++PR++  QAA
Sbjct:   12 WP---GVIAAYRDRLPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVE--GLNPTGSFKDRGMTMAVTDA--LAHGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPTISLVNSVNPVRIEGQKTAAFEIVDVLG-TAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAA 229          
BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC_MYCLE (Probable threonine synthase OS=Mycobacterium leprae GN=thrC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.723e-30
Identity = 88/229 (38.43%), Postives = 131/229 (57.21%), Query Frame = 1
Query:  274 WPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFL*GVQMCKELGLVDRIPRLVCAQAA 957
            WP   GV +     LP  D    V+  EG + L  A R  ++      L V+  G++ TGSFKD GMT+ V+    L +  + V+   CASTG+TSA+ +AY A AG+   V +P  KI++ +L Q + +GA ++ +D +FD C++L R++ ++ P I L NS+N +R+EGQKTA  EI+       P    +P GN GNI A+  G       GL+DR+PR++  QAA
Sbjct:   12 WP---GVIAAYRDRLPVGDDWTPVTLLEGGTPLIAAPRLSEQTGCTIHLKVE--GLNPTGSFKDRGMTMAVTDA--LARGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPMISLVNSVNPVRIEGQKTAVFEIVDALG-TAPHVHALPVGNAGNITAYWKGYTEYHADGLIDRLPRMLGTQAA 229          
BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC_BACSU (Threonine synthase OS=Bacillus subtilis GN=thrC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.707e-29
Identity = 73/189 (38.62%), Postives = 114/189 (60.32%), Query Frame = 1
Query:  316 LPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAF 882
            LP  D    ++  EGN+ L    +  ++     +L VK  G++ TGSFKD GM + V++    ++ N  ++   CASTG+TSAA +AY A A +  IV +P  KI+  +L Q +  GA ++++D +FD  ++++R +  + PI L NS+N  R+EGQKTAA E+ +Q   E PD + +P GN GNI A+
Sbjct:   13 LPVTDQTPALTLHEGNTPLIHLPKLSEQL--GIELHVKTEGVNPTGSFKDRGMVMAVAKAK--EEGNDTIM---CASTGNTSAAAAAYAARANMKCIVIIPNGKIAFGKLAQAVMYGAEIIAIDGNFDDALKIVRSICEKSPIALVNSVNPYRIEGQKTAAFEVCEQLG-EAPDVLAIPVGNAGNITAY 193          
BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC_BACHD (Threonine synthase OS=Bacillus halodurans GN=thrC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.684e-28
Identity = 75/198 (37.88%), Postives = 118/198 (59.60%), Query Frame = 1
Query:  289 GVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAF 882
            G+  + +  LP  +   +++  EGN+ L   E   KE+      +VK+ G + TGSFKD GM + V++    ++ ++ +I   CASTG+TSAA +AY A AG+  IV +P  KI++ +L Q +  GA VL +  +FD  + ++R ++ + PI L NS+N  R+EGQKT+A EI      + PD + +P GN GNI A+
Sbjct:    6 GLLQEYKEFLPVTEETPLLTLGEGNTPLIPLENLSKEWGVK--AYVKYEGANPTGSFKDRGMVMAVAKAK--EEGSRTII---CASTGNTSAAAAAYGARAGLRCIVVIPEGKIALGKLAQAVMYGAEVLEIKGNFDHALDIVRSISEKEPITLVNSVNPYRIEGQKTSAFEICDALG-QAPDVLAIPVGNAGNITAY 195          
The following BLAST results are available for this feature:
BLAST of FC878044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THRC_SOLTU2.624e-15888.27Threonine synthase, chloroplastic OS=Solanum tuber... [more]
THRC1_ARATH2.221e-15786.64Threonine synthase 1, chloroplastic OS=Arabidopsis... [more]
THRC2_ARATH2.079e-15587.30Threonine synthase 2, chloroplastic OS=Arabidopsis... [more]
THRC_METJA4.181e-4740.58Probable threonine synthase OS=Methanocaldococcus ... [more]
THRC_SYNY32.543e-3641.12Threonine synthase OS=Synechocystis sp. (strain PC... [more]
THRC_MYCTU6.481e-3239.30Probable threonine synthase OS=Mycobacterium tuber... [more]
THRC_MYCBO6.481e-3239.30Probable threonine synthase OS=Mycobacterium bovis... [more]
THRC_MYCLE2.723e-3038.43Probable threonine synthase OS=Mycobacterium lepra... [more]
THRC_BACSU6.707e-2938.62Threonine synthase OS=Bacillus subtilis GN=thrC PE... [more]
THRC_BACHD9.684e-2837.88Threonine synthase OS=Bacillus halodurans GN=thrC ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA13DE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13DE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878044 ID=FC878044; Name=FC878044; organism=Citrus clementina; type=EST; length=961bp
CCGAAATACACAAACAGAGGTGGCGGCGGCAGTGGCATCAACATAAGGGA
CGAGGCACGTCGCCGGAATGTTATCTACACCCACAAGTTTTCTGCAAAGT
ACGTGCCATTCAATGCGGGGCCGTCTTGTACTGAGTCGTATTCTCTCGAC
GAGGTCGTGTACAGGTCCCAGTCTGGGGGACTTCTCGACGTGCAGCACGA
CATGGGCGCTTTGAAGCACTACGACGGCTCTTACTGGAAGGCGCTGTTCG
ATTCACGAGTCGGCAAAAGGACGTGGCCGTACGGATCAGGGGTTTGGTCA
AAGAAAGAGTGGGTGCTGCCCGAGATTGATAGTGATGATATCGTGAGCGC
TTTCGAAGGGAACTCGAATCTGTTCTGGGCTGAAAGATTTGGCAAAGAGT
TTTTGCAAATGAATGATTTGTGGGTTAAGCACTGTGGGATTAGTCATACA
GGAAGTTTTAAGGATCTGGGTATGACTGTTTTGGTGAGTCAAGTGAATAG
GTTAAAGAAAATGAACAAACCGGTTATTGGGGTTGGCTGTGCTTCAACTG
GCGATACCTCAGCTGCTCTGTCAGCTTATTGTGCCTCTGCTGGCGTTCCT
TCTATTGTGTTTTTGCCCGCTAATAAGATTTCAATTGCCCAGTTAGTGCA
GCCTATTGCAAATGGTGCTTTTGTTTTGAGTCTTGATACTGATTTTGATG
GCTGCATGCAGTTGATAAGGGAAGTTACTTCTGAGTTGCCTATTTATTTA
GCTAATTCTTTGAATAGTTTGAGGTTAGAGGGACAAAAGACTGCTGCTAT
TGAGATATTGCAGCAGTTTGATTGGGAAGTTCCCGATTGGGTGATAGTTC
CTGGTGGTAATTTGGGAAATATATATGCTTTTTTATAAGGGGTTCAAATG
TGCAAAGAGTTAGGGCTTGTTGATAGGATTCCTCGGCTTGTATGTGCACA
AGCTGCAAATG
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