FC878046
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.406e-25 Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 1 Query: 1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPRRWA 240 DIRVVVNYDFPTGVEDYVHRI VAYTFF DQDS+YASDL+K+LEGA Q V ++LRDM SRGG GR RRWA Sbjct: 492 DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMVSRGGYGGRSRRWA 571
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 4.092e-25 Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 1 Query: 1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR-RWA 240 DIRVV+NYDFPTG+EDYVHRI VAYTFF DQDS+YA+DLIK+LEGA Q+VPR+L DMASRGG GR R RWA Sbjct: 462 DIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMASRGGRGGRKRNRWA 542
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.116e-25 Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 1 Query: 1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 231 DIRVV+NYDFPTG+EDYVHRI +AYTFF DQDS++A DL+K+LEGA Q VP ELRDMASRGGGMGR R Sbjct: 457 DIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALDLVKVLEGANQCVPTELRDMASRGGGMGRAR 533
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23 Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1 Query: 1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR-GGGMGRPRRW 237 DIRVVVNYDFP GVEDYVHRI +AYTFFGDQD+++ASDLIK+LEGA Q+VP ++R+MA+R GGGM + RRW Sbjct: 473 DIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATRGGGGMNKFRRW 552
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 6.533e-23 Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1 Query: 1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR-GGGMGRPRRWAP 243 DIR VVNYDFP GVEDYVHRI A+TFFGDQDS++ASDLIK+LEGA Q+VP ++R+MA+R GGGM + RW P Sbjct: 470 DIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATRGGGGMNKFSRWGP 551
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.434e-22 Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1 Query: 1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRP 228 DIRVV+NYDFPTGVEDYVHRI VA+TFF +QD +YA DLIK+LEGA QQVP ++RD+A RGGG G P Sbjct: 747 DIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGP 822
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13 Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1 Query: 1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMG 222 DI V+NYDFPT EDYVH+I AYT+F ++S+ A +LI +L AKQ++PRE+ +M GGG G Sbjct: 444 DISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSARELIGILREAKQEIPREIEEMGRFGGGGG 517
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11 Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1 Query: 1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA---SRGGGMGRPR 231 DI V+NYDFP EDY+HRI +YT+F +S+ A +L+++L +K +P EL +MA RGGG GR R Sbjct: 424 DIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILRESKADIPPELEEMAMYGGRGGGGGRGR 503 The following BLAST results are available for this feature:
BLAST of FC878046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878046 ID=FC878046; Name=FC878046; organism=Citrus clementina; type=EST; length=654bpback to top |