FC878046

Overview
NameFC878046
Unique NameFC878046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7884 contig Ccv1_Contig7884:1..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.406e-25
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPRRWA 240
            DIRVVVNYDFPTGVEDYVHRI          VAYTFF DQDS+YASDL+K+LEGA Q V ++LRDM SRGG  GR RRWA
Sbjct:  492 DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMVSRGGYGGRSRRWA 571          
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.092e-25
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR-RWA 240
            DIRVV+NYDFPTG+EDYVHRI          VAYTFF DQDS+YA+DLIK+LEGA Q+VPR+L DMASRGG  GR R RWA
Sbjct:  462 DIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMASRGGRGGRKRNRWA 542          
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.116e-25
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 231
            DIRVV+NYDFPTG+EDYVHRI          +AYTFF DQDS++A DL+K+LEGA Q VP ELRDMASRGGGMGR R
Sbjct:  457 DIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALDLVKVLEGANQCVPTELRDMASRGGGMGRAR 533          
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR-GGGMGRPRRW 237
            DIRVVVNYDFP GVEDYVHRI          +AYTFFGDQD+++ASDLIK+LEGA Q+VP ++R+MA+R GGGM + RRW
Sbjct:  473 DIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATRGGGGMNKFRRW 552          
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.533e-23
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR-GGGMGRPRRWAP 243
            DIR VVNYDFP GVEDYVHRI           A+TFFGDQDS++ASDLIK+LEGA Q+VP ++R+MA+R GGGM +  RW P
Sbjct:  470 DIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATRGGGGMNKFSRWGP 551          
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.434e-22
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRP 228
            DIRVV+NYDFPTGVEDYVHRI          VA+TFF +QD +YA DLIK+LEGA QQVP ++RD+A RGGG G P
Sbjct:  747 DIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGP 822          
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMG 222
            DI  V+NYDFPT  EDYVH+I           AYT+F  ++S+ A +LI +L  AKQ++PRE+ +M   GGG G
Sbjct:  444 DISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSARELIGILREAKQEIPREIEEMGRFGGGGG 517          
BLAST of FC878046 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 DIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA---SRGGGMGRPR 231
            DI  V+NYDFP   EDY+HRI           +YT+F   +S+ A +L+++L  +K  +P EL +MA    RGGG GR R
Sbjct:  424 DIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILRESKADIPPELEEMAMYGGRGGGGGRGR 503          
The following BLAST results are available for this feature:
BLAST of FC878046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RH14_ORYSJ1.406e-2571.25DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sa... [more]
RH40_ORYSJ4.092e-2570.37DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]
DB10_NICSY9.116e-2570.13ATP-dependent RNA helicase-like protein DB10 OS=Ni... [more]
RH46_ARATH1.316e-2366.25DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
RH14_ARATH6.533e-2363.41DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]
RH40_ARATH9.434e-2265.79DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop... [more]
DBP2_USTMA3.593e-1347.30ATP-dependent RNA helicase DBP2 OS=Ustilago maydis... [more]
DBP2_CRYNE4.392e-1142.50ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA8CB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA8CB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878046 ID=FC878046; Name=FC878046; organism=Citrus clementina; type=EST; length=654bp
GACATCAGAGTGGTTGTCAACTATGACTTCCCCACTGGAGTGGAGGACTA
TGTCCACAGAATTGGGAGAACTGGCAGGGCTGGAGCCACAGGAGTGGCTT
ATACATTTTTTGGTGATCAGGATTCCAGGTATGCTTCAGATCTTATCAAA
CTTTTGGAAGGTGCAAAGCAGCAAGTTCCCCGTGAACTTCGTGATATGGC
CTCACGTGGTGGAGGGATGGGAAGGCCTAGACGCTGGGCTCCTACTTCTA
GTGGCCGTGATGGGGGCCGTGGTGGACGTAACGATTCGGGTTATGGTGGA
AGGGGTGGACGGGGATTTTCTGGCTCATCTAATAGAGGTGACCATGATTC
ACGTGACAGGGCTCGTTATAATGATGGTCATAGGGGTCGTAGTAGCAGTC
GAAGCCCTGACAGAGCACCATCTGGACGTGGACGCTCCCCTGTGCGCAGC
TTCCACCAGGCAATGATGGAGAGGGGTCGGTCATCTCCGCCACCCCAACA
CAAGAGTCCTTTTCGCGAGAGGTCGCGATCCCCTCTTGGTGGGAGGAGAA
ATTTTGGGAATTCATTTGAAGATCAACTGGGATTGAGAAGATCAAGTGGT
GGACGTGATGATGGATATGGGGACGAAGAGGAGGAAGGCATGATTCGTCC
TGAA
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