FC878047

Overview
NameFC878047
Unique NameFC878047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878047_ssr506 microsatellite FC878047_ssr506:506..517. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11202 contig Ccv1_Contig11202:42..882. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC878047 vs. ExPASy Swiss-Prot
Match: KGUA_THEEB (Guanylate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=gmk PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.138e-11
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 3 
Query:  645 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEF*TMI 839
            P P  LI VI+GPSGVGK  L+++LR+    L   V+AT+RP RP E  G DYYFVS EEF  MI
Sbjct:    6 PQPGQLI-VITGPSGVGKGTLLRQLRQRHPELALSVSATTRPPRPTEVAGVDYYFVSVEEFKAMI 69
[Close]
BLAST of FC878047 vs. ExPASy Swiss-Prot
Match: KGUA_LACPL (Guanylate kinase OS=Lactobacillus plantarum GN=gmk PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.138e-11
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 3 
Query:  660 LIIVISGPSGVGKDALIKKLRESRDS-LRFVVTATSRPMRPGEENGKDYYFVSKEEF 827
            ++IV+SGPSGVGK  + K++ +S D+  ++ V+ T+R MRPGE +GKDYYFVSKEEF
Sbjct:    6 MLIVLSGPSGVGKGTVRKEIFDSDDNDFQYSVSMTTRQMRPGEVDGKDYYFVSKEEF 62
[Close]
BLAST of FC878047 vs. ExPASy Swiss-Prot
Match: KGUA_SYMTH (Guanylate kinase OS=Symbiobacterium thermophilum GN=gmk PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.764e-11
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:  651 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEF 827
            P  L+IV++GPS VGK  + + L      +RF V+ T+RP RPGE +G +YYF+SKEEF
Sbjct:    5 PKGLLIVVTGPSAVGKGTICRALLAETPGIRFSVSCTTRPKRPGEVDGVEYYFISKEEF 63
The following BLAST results are available for this feature:
BLAST of FC878047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
KGUA_THEEB5.138e-1156.92Guanylate kinase OS=Thermosynechococcus elongatus ... [more]
KGUA_LACPL5.138e-1157.89Guanylate kinase OS=Lactobacillus plantarum GN=gmk... [more]
KGUA_SYMTH8.764e-1150.85Guanylate kinase OS=Symbiobacterium thermophilum G... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA35BB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878047 ID=FC878047; Name=FC878047; organism=Citrus clementina; type=EST; length=841bp
TGCTGTTCCGTCTCTTTCAAAACTCAAAACTGAGAACAAGCCCTCCTTTA
TCGGCCACCCGCCGCCGGTACCGCGTCGCGGCTGCCGCCGCCACGTTGTC
TGCCCACTACTGGTCCTTCAAGGATATATTACCTTAAAATTGGTAATCAC
AAAACCATGCTGCCGTCAGTATAATTTACACACCACGCCAAGCCCACTTC
AGGGTCTTTGTCAAGTTAAGCAGCAGCGGTGGCAAGGAGATTCTGGGGTC
AAGTGCCTTGTGCAAATTTAATTTTGGTGTGTGGGTTCTGAAAAATTTTG
AGTGGGGTAGGGTTTTTTGTTTTGGTAATGTTATTGGTGTCTGATTTGTG
TTTTGTGTTCTTTTTTACACTCTGCAACAAAATAACCTCATGTTTCGCCG
ACTCTGCACTTCGTTATCTCTCTCCAGCATCTCAAAAACCAACTCCCTAT
TTGCCTTCCAAAATAACCCCATTAAAGTTAAGCAACCACAACGAAGATTC
CATCACTCTCTCTCTCTAACCCCACATTTTTTCTCATCGAACCTCAGAAT
GAACCATACCCAGACTGCTGCAGTTAAAAAGGCTGAGCTTTTACGGTCTC
TTGAAGCTTCTTTGGGTCATGCCTTCGATTCAAACCCAGTTTGTCCTCCT
CCAAATCCTTTGATAATTGTAATTAGTGGGCCAAGTGGGGTTGGCAAAGA
TGCTCTTATAAAGAAGCTGAGGGAATCGCGTGATTCACTTCGTTTTGTTG
TGACTGCTACTAGTCGGCCAATGCGGCCTGGCGAAGAGAATGGGAAAGAT
TATTACTTTGTGTCAAAGGAAGAGTTTTAAACAATGATTGA
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