FC878048

Overview
NameFC878048
Unique NameFC878048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12249 contig Ccv1_Contig12249:198..1021. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878048 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.444e-50
Identity = 104/157 (66.24%), Postives = 119/157 (75.80%), Query Frame = 3
Query:  270 GDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 740
            GD+ LVLTTDPKPRLRWT ELH+RFVDAV QLGGPDKATPKTIMR MGVKGLTLYHLKSHLQK+RLGKQ  KE  ++S      A + D          M++++ N+         +QMEVQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L
Sbjct:   23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170          
BLAST of FC878048 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.389e-13
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  300 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 464
            P PRLRWT ELH  FV AV  LGG  KATPK +++ M VKGLT+ H+KSHLQ YR
Sbjct:   22 PVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76          
The following BLAST results are available for this feature:
BLAST of FC878048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH2.444e-5066.24Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH2.389e-1365.45Putative Myb family transcription factor At1g14600... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA69AF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878048 ID=FC878048; Name=FC878048; organism=Citrus clementina; type=EST; length=824bp
CACCCCTTTTACTCTCTCTGTCTTTCTCCTTCACTCTCTCTTTCTAATCT
CAGCTCAAAGCCAAAGCTGAAGCTGAATCCTTGCTGCTGAAGCTCAAAGC
CCTCTCCTCCTTTAATCTTCTCTCTTCGTTCGCTCACTCGTCTTGATTTC
TTTTTCGAGATACTGCATTCTTGAGTCTTTGATAGATGTACTCGGCGATT
CACTCGCTGCCACTGGACGGTGGCCACCCCGACTTTCAAGGGGGCCCGCT
CGACGGCACCAATCTCCCCGGCGACGCCTGCTTGGTCTTAACCACCGATC
CCAAGCCCCGCCTCCGCTGGACCGCTGAGCTTCACGACCGCTTCGTCGAT
GCTGTCACCCAGCTCGGTGGCCCCGACAAAGCAACACCCAAGACTATCAT
GAGAACGATGGGAGTGAAAGGCCTTACCCTTTATCATCTCAAATCACATC
TTCAGAAGTACCGCTTGGGAAAGCAAGCGTGCAAGGAAACGACAGAGAAC
TCCAAGGATGTTTCTTGTGTTGCTGAAAGTCAGGACACTGGTTCATCAAC
AACATCGTCAACCAGAATGGTAGCGCAAGATCCAAATGATGGTTACCAGG
TTACTGAGGCTTTGCGAGTACAGATGGAAGTCCAACGAAGGCTTCATGAG
CAGCTGGAGGTTCAGCGACGGCTCCAGCTCCGAATTGAAGCGCAAGGCAA
ATACCTACAGTCAATACTTGAGAAAGCTTGTAAAGCTCTGAATGATCAGG
CCATCGTGGCTGCTGGGCTTGAAGCTGCTAGAGAGGAGCTTTTCGAACTT
GCCATCAAAGTTTCCAATGATTGT
back to top