FC878054

Overview
NameFC878054
Unique NameFC878054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length889
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878054_ssr337 microsatellite FC878054_ssr337:337..348. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13748 contig Ccv1_Contig13748:96..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878054 vs. ExPASy Swiss-Prot
Match: WRKY7_ARATH (Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.043e-45
Identity = 136/322 (42.24%), Postives = 163/322 (50.62%), Query Frame = 1
Query:    7 MAVELMM-----GYGCGDSF---AAAVKMEENAVQEAASEGMQSIGEFIKLLSRSGQVPXXXXXXXXXXXXXXPTNLEPDKEIKVAAEVAVNNFKKVISLLGRPRTGHARFRRAPVGSXXXXXXXXQKEEKVHLQEPAGPSVQSTNHLSKEQV----SAFKVYCXXXXXXXXXXXXXXQKSNPNSTVVTKSDH--------VPSSINFS----ASATNSFISSLTGTAGDTDSIQPSFSSGFQFTTXXXXXXXXXXXXXXX----RKCNSMDDAALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYG 888
            M VELMM     G G GD F   AAA KME+ A++EAAS G+  + EF+KL+ +S Q                PT  +   EI    +VAVN+FKKVISLLGR RTGHARFRRAP  +          EE+V ++E    +         EQ     SAF+VYC                +N N T    S           PS+INF+     SATNSF+SS      DTDS     SSGF+FT                    R+CNS         S S RCHCSKKRKSR+KRV RVPA+SSKMADIP D++SWRKYG
Sbjct:    1 MTVELMMSSYSGGGGGGDGFPAIAAAAKMEDTALREAASAGIHGVEEFLKLIGQSQQ----------------PTE-KSQTEITAVTDVAVNSFKKVISLLGRSRTGHARFRRAPASTQTPFKQTPVVEEEVEVEEKKPETSSVLTKQKTEQYHGGGSAFRVYCPTPIHRRPPLSHN-NNNNQNQTKNGSSSSSPPMLANGAPSTINFAPSPPVSATNSFMSS---HRCDTDSTH--MSSGFEFTNPSQLSGSRGKPPLSSASLKRRCNS---------SPSSRCHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYG 290          
BLAST of FC878054 vs. ExPASy Swiss-Prot
Match: WRK15_ARATH (Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.088e-30
Identity = 104/303 (34.32%), Postives = 140/303 (46.20%), Query Frame = 1
Query:    7 MAVELMMGYGCGDSFAAAVKMEENAVQEAASEGMQSIGEFIKLLSRSGQVPXXXXXXXXXXXXXXPTNLEPDKEIKVAAEVAVNNFKKVISLLGRPRTGHARFRRAPVGSXXXXXXXXQKEEKVHLQEPAGPSVQSTNHLSKEQVSAFKVYCXXXXXXXXXXXXXXQKSNPNSTVVTKSDHVPSSINFSASATNSFISSLTGTAGDTDSIQ-------PSFSSGFQFTTXXXXXXXXXXXXXXXRKCNSMDDAALKCGS--SSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYG 888
            MAVELM       ++ + V  +  AVQEAA+ G++SI  FI L+SR                     +LE  +     A+ AV+ FK+VISLL R RTGHARFRRAPV                H+  P          L +E+                       K+ P  + +     +    +FS+S      SSL+    ++D+ +       PS ++ F   T               RKCNS +    KC S  SSGRCHCSKKRK + +R+ RVPAIS+KM+D+PPDDYSWRKYG
Sbjct:    1 MAVELMTR-----NYISGVGADSFAVQEAAASGLKSIENFIGLMSRDSFNSDQPSSSSASASASAAADLESARN--TTADAAVSKFKRVISLLDRTRTGHARFRRAPV----------------HVISPV---------LLQEE----------------------PKTTPFQSPLPPPPQMIRKGSFSSSMKTIDFSSLSSVTTESDNQKKIHHHQRPSETAPFASQTQSLSTTVSSFSKSTKRKCNSENLLTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDYSWRKYG 249          
BLAST of FC878054 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.166e-24
Identity = 91/287 (31.71%), Postives = 130/287 (45.30%), Query Frame = 1
Query:   70 EENAVQEAASEGMQSIGEFIKLLSRSGQVPXXXXXXXXXXXXXXPTNLEPDKEIKVAAEVAVNNFKKVISLLGRPRTGHARFRRAPVGSXXXXXXXXQKEEKVHLQEPAGPSVQ-STNHLSKEQVSAFKVYCXXXXXXXXXXXXXXQKSNPNSTVVTKSDHVPSSINFSASATNSFISS-LTGTAGDTDS--------IQPSFSSGFQFTTXXXXXXXXXXXXXXXRKC----NSMDDAALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYG 888
            ++ A+QEAAS+G+QS+   I++LS   +                    + + +     +  V+ FK VISLL R  TGHARFRR PV S         + + V   +P  P V+ +TNH                            K +   T    ++   S  NFS S  +SF+SS +TG    ++         +QP  SSG                    ++C    +S   +    GS+ G+CHC K RK+R+KR  RVPAIS+K+ADIPPD+YSWRKYG
Sbjct:   13 DQTAIQEAASQGLQSMEHLIRVLSNRPEQ-------------------QHNVDCSEITDFTVSKFKTVISLLNR--TGHARFRRGPVHSTSSAASQKLQSQIVKNTQPEAPIVRTTTNH-------------PQIVPPPSSVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNGKIFLASAPLQPVNSSG----------KPPLAGHPYRKRCLEHEHSESFSGKVSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYG 255          
BLAST of FC878054 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.425e-22
Identity = 87/282 (30.85%), Postives = 123/282 (43.62%), Query Frame = 1
Query:   64 KMEEN-AVQEAASEGMQSIGEFIKLLSRSGQVPXXXXXXXXXXXXXXPTNLEPDKEIKVAAEVAVNNFKKVISLLGRPRTGHARFRRAPVGSXXXXXXXXQKEEKVHLQEPAGPSVQSTNHLSKEQVSAFKVYCXXXXXXXXXXXXXXQKSNPNSTVVTKSDHVP--SSINFSASATNSFISSLTGTAGDTDSIQPSFSSGFQFTTXXXXXXXXXXXXXXXRKCNSMDDA----ALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYG 888
            KME+  A+QEAAS+G++S+   I++LS   +                    E + +     +  V+ FKKVISLL R  +GHARFRR PV S             V +  PA   + +   +S  Q +   V                          TKS  V   +  +FS S+ +SF+SS     G        F +                     ++C   D +        GS +G+CHC K RK+R+KR  RVPA+S+K+ADIPPD+YSWRKYG
Sbjct:   10 KMEDQTAIQEAASQGLKSMEHLIRVLSNRPE--------------------ERNVDCSEITDFTVSKFKKVISLLNR--SGHARFRRGPVHSPPSSSVPPP----VKVTTPAPTQISAPAPVSFVQANQQSVTLDFTRPSVFGAK-------------TKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSKGSSIFLAPAPAVPVTSSGKPPLSGLPYRKRCFEHDHSEGFSGKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYG 252          
BLAST of FC878054 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.090e-18
Identity = 56/115 (48.70%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  556 SSINFSASATNSFISSLT--GTAGDTDSIQPSFSSGFQFTTXXXXXXXXXXXXXXXRKCNSMDD--AALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYG 888
            SS   + S+T SF+SSL+  G+  + +  + SF  G   +T               RKC    D   +LKCGSSS RCHC+KKRK R++R  RVPAIS+K+ADIPPDDYSWRKYG
Sbjct:  217 SSCTPTMSSTRSFVSSLSIDGSVANIEG-KNSFHFGVPSSTDQNSLHSK-------RKCPLKGDEHGSLKCGSSS-RCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRKYG 322          
BLAST of FC878054 vs. ExPASy Swiss-Prot
Match: WRK39_ARATH (Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.603e-16
Identity = 57/129 (44.19%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  511 SNPNSTVVTKSDHVPSSINFSASATN---SFISSLTGTAGDTDSIQPSFSSGFQFTTXXXXXXXXXXXXXXXRKCNSMDDAALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYG 888
            S  NS V  K D   SS  ++ S +N   SF+SSL+  A  TD  + SF                       +    M   +LKCGS S +CHCSKKRK R+KR  +VPAIS+K+ADIPPD+YSWRKYG
Sbjct:  157 SRSNSGVNLKFDGSGSSC-YTPSVSNGSRSFVSSLSMDASVTDYDRNSFH------------LTGLSRGSDQQHTRKMCSGSLKCGSRS-KCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYG 271          
BLAST of FC878054 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.399e-16
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  559 SINFSASATNSFISSLTGTAGDTDSIQPSFSSG-FQFTTXXXXXXXXXXXXXXXRKCNSMDDAALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYG 888
            S N +AS++ SF+SSL+   G   S+  S +S  FQ  +               R+C   +D   +C + S RCHCSKKRK RI+R  +VPAIS+K+ADIP D++SWRKYG
Sbjct:  233 SSNCTASSSRSFLSSLS-MEGSLASLDGSRTSRPFQLLSGSQTASTPELGLVQRRRCAGREDGTGRCATGS-RCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYG 341          
BLAST of FC878054 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 1
Query:  745 ALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYG 888
            +LKCGS S +CHCSKKRK R+KR  +VPAIS+K+ADIPPD+YSWRKYG
Sbjct:  225 SLKCGSKS-KCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYG 271          
The following BLAST results are available for this feature:
BLAST of FC878054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
WRKY7_ARATH2.043e-4542.24Probable WRKY transcription factor 7 OS=Arabidopsi... [more]
WRK15_ARATH1.088e-3034.32Probable WRKY transcription factor 15 OS=Arabidops... [more]
WRK11_ARATH1.166e-2431.71Probable WRKY transcription factor 11 OS=Arabidops... [more]
WRK17_ARATH1.425e-2230.85Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK21_ARATH8.090e-1848.70Probable WRKY transcription factor 21 OS=Arabidops... [more]
WRK39_ARATH2.603e-1644.19Probable WRKY transcription factor 39 OS=Arabidops... [more]
WRKY1_MAIZE3.399e-1644.14Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK74_ARATH8.372e-1575.00Probable WRKY transcription factor 74 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA13DE10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13DE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878054 ID=FC878054; Name=FC878054; organism=Citrus clementina; type=EST; length=889bp
AAAGAAATGGCCGTGGAGCTGATGATGGGTTACGGTTGCGGTGATAGTTT
TGCAGCAGCTGTGAAGATGGAAGAGAACGCTGTACAAGAAGCTGCATCCG
AAGGTATGCAGAGCATTGGTGAGTTCATAAAATTATTGTCTCGAAGTGGT
CAAGTACCATCTGAACAACAAACACAGTACCAAGAATCTACATCTTCCTC
TCCAACAAATCTCGAACCTGACAAGGAAATCAAGGTCGCAGCTGAAGTGG
CCGTGAACAATTTCAAGAAAGTTATTTCTCTACTTGGTAGACCAAGAACA
GGGCATGCAAGATTCAGAAGAGCTCCTGTTGGTAGCCCTCCTCCTCCTCC
ACCTCCTCCTCAAAAAGAAGAAAAAGTACATCTTCAAGAACCAGCAGGGC
CATCAGTTCAATCTACAAATCATCTTTCAAAGGAACAAGTTTCTGCCTTC
AAGGTTTATTGCCCTACCCCTGTTCATCGTCTGCCTCCGTTGCCTCACCA
TGTTCAGAAGAGTAATCCTAATTCTACGGTGGTGACTAAGTCCGATCATG
TGCCAAGCAGTATCAATTTCTCAGCCTCTGCCACAAATTCTTTCATATCC
TCGCTCACAGGCACAGCAGGGGATACCGACAGCATACAACCTTCTTTCTC
ATCTGGGTTTCAATTTACCACACCATCATCAGCTGGAAAGCCACCTCTGT
CTTCTTCCTCGCTCAAGAGAAAGTGCAATTCCATGGATGATGCTGCTCTC
AAGTGTGGCTCATCTTCAGGGCGCTGCCATTGCTCCAAGAAGAGAAAATC
AAGGATTAAGAGAGTGACTAGAGTTCCAGCGATAAGCTCTAAGATGGCTG
ATATTCCACCTGATGATTACTCCTGGAGAAAGTATGGCC
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