FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13805 contig Ccv1_Contig13805:89..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.896e-90
Identity = 165/201 (82.09%), Postives = 188/201 (93.53%), Query Frame = 2
Query:  224 QTPATAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLVPVPEKVKP 826
            QT  +A+RGAE+D MGLLL+ERIVFLG++IDDFVADAI+SQLLLLDA+DP KDI+LF+NSPGGSLSATMAIYDVVQLVRADVST+ALG++ASTAS+ILG GTKGKRFAMPNTRIMIHQP+GGASGQ +DVEIQA+E+MHNK+N T II+G T RSFEQV KDIDRDRYMSPIEAVEYG+IDGVID DSIIPL PVP++VKP
Sbjct:   67 QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKP 267          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMA (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus GN=clpP3 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.044e-53
Identity = 100/212 (47.17%), Postives = 153/212 (72.17%), Query Frame = 2
Query:  155 ISTKTLALQQQQRQHDVPLSSAPQTPAT---AMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            I+TK +   Q + + D+P S     P     + RG  A D    LL+ERI+FLG +++D +ADA+++Q+L L+A+DP KDI+L++NSPGGS++A +AIYD +Q V  D+ T+  G++AS  + +L GG+KGKR A+PN+RIMIHQP+GGA GQ +++EIQA+EI+  K+    +++  TG+S E++ +D DRD ++SP EAVEYG+ID V++
Sbjct:    2 INTKCIHPVQNKWKGDLPCSGPGVLPTVIEQSGRGERAFDIYSRLLRERIIFLGTDVNDQIADALVAQMLFLEAEDPEKDIQLYINSPGGSVTAGLAIYDTMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHTGQSLEKISEDTDRDHFLSPQEAVEYGLIDKVVN 213          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_MOOTA (ATP-dependent Clp protease proteolytic subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.049e-52
Identity = 99/188 (52.66%), Postives = 135/188 (71.81%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            P       RG  A D    LLK+RI+FLG+ IDD VA+ +I+Q+L L+A+DP KDI L++NSPGGS+SA MAI+D +Q +R DVST+ +G++AS  + +L  G KGKRFA+PN+ IMIHQPMGG  GQ +D+EI A+ I+  +DN  RI+S  TG+  EQ+ +D DRD +M+  EA EYG+ID VI +
Sbjct:    6 PMVVEQTSRGERAYDIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGSISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQGQAVDIEIHAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREAREYGLIDEVITK 193          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.049e-52
Identity = 99/196 (50.51%), Postives = 142/196 (72.45%), Query Frame = 2
Query:  203 VPLSSAPQTPATAM---RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            +P+S+    P       RG  A D    LL+ERI+FLG  +DD VADA+++Q+L L+A+DP KDI+++VNSPGGS++A +AIYD +Q V  DV T+  G++AS  + +L GGTKGKR A+PN RIMIHQP+GGA GQ +D+EIQA+EI+  K+    +++  TG+  +++ +D DRD ++SP EAVEYG+ID V+D
Sbjct:    1 MPISAPGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVVD 196          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.049e-52
Identity = 95/179 (53.07%), Postives = 137/179 (76.54%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            RG  A D    LL+ERI+FLG  +DD VADA+++Q+L L+A+DP KDI++++NSPGGS++A +AIYD +Q V  DV T+  G++AS  + +L GGTKGKR A+PN RIMIHQP+GGA GQ +D+EIQA+EI++ K+    +++  TG+  +++ +D DRD ++SP EAVEYG+ID V+D
Sbjct:   18 RGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVVD 196          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNPX (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain WH8102) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.328e-51
Identity = 97/203 (47.78%), Postives = 145/203 (71.43%), Query Frame = 2
Query:  182 QQQRQHDVPLSSAPQTPATAM---RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            Q + + ++P+S+    P       RG  A D    LL+ERI+FLG  +DD VADA+++Q+L L+A+DP KDI++++NSPGGS++A +AIYD +Q V  DV T+  G++AS  + +L GG KGKR A+PN RIMIHQP+GGA GQ +D+EIQA+EI+  K+    +++  TG+  +++ +D DRD ++SP EAV+YG+ID V+D
Sbjct:   11 QNRWRAEMPISAPGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMADHTGQPLDKIAEDTDRDYFLSPAEAVQYGLIDRVVD 213          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.735e-51
Identity = 97/183 (53.01%), Postives = 137/183 (74.86%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            RG  A D    LL+ERIVFLG  +DD VAD+I++QLL L+A+DP KDI+L++NSPGGS++A MAIYD +Q V  DV+T+  G++AS  + +L GG +GKR A+P+ RIMIHQP+GGA GQ +D+EIQAREI+++K     +++  TG+  E+++ D DRD +MSP EA  YG+ID V+ R ++
Sbjct:   47 RGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVLTRPTM 229          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.735e-51
Identity = 97/183 (53.01%), Postives = 137/183 (74.86%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            RG  A D    LL+ERIVFLG  +DD VAD+I++QLL L+A+DP KDI+L++NSPGGS++A MAIYD +Q V  DV+T+  G++AS  + +L GG +GKR A+P+ RIMIHQP+GGA GQ +D+EIQAREI+++K     +++  TG+  E+++ D DRD +MSP EA  YG+ID V+ R ++
Sbjct:   47 RGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVLTRPTM 229          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMM (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.266e-51
Identity = 98/195 (50.26%), Postives = 141/195 (72.31%), Query Frame = 2
Query:  206 PLSSA---PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            P+SS    P     + RG  A D    LL+ERI+FLG  +DD VADA+++Q+L L+A+DP KDI++++NSPGGS++A +AIYD +Q V  DV T+  G++AS  + +L GGTKGKR A+PN RIMIHQP+GGA GQ +D+EIQA+EI+  K+    +++  TG+   ++ +D DRD ++SP +AVEYG+ID V+D
Sbjct:   19 PVSSPGILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAVEYGLIDRVVD 213          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMT (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.959e-51
Identity = 91/172 (52.91%), Postives = 135/172 (78.49%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            D    LL+ERI+FLG +++D VADA+++Q+L L+A DP KDI+L+VNSPGGS++A +AIYD +Q V  DV T+  G++AS  + +L GGTKGKR A+PN+RIMIHQP+GGA GQ +++EIQA+EI++ K+    +++  TG++ +++ +D DRD ++SP EAVEYG+ID V+
Sbjct:   17 DIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQLYVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVEYGLIDKVV 188          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP4_ARATH1.896e-9082.09ATP-dependent Clp protease proteolytic subunit 4, ... [more]
CLPP3_PROMA7.044e-5347.17ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP_MOOTA2.049e-5252.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNS92.049e-5250.51ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNSC2.049e-5253.07ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNPX1.328e-5147.78ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP3_SYNP61.735e-5153.01ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNE71.735e-5153.01ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_PROMM2.266e-5150.26ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP3_PROMT2.959e-5152.91ATP-dependent Clp protease proteolytic subunit 3 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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